RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DNM1LO00429 736 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 OPLAHO14841 1288 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 SLC27A2O14975 620 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 MSCO60682 206 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 NT5C2P49902 561 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 ACVR2BQ13705 512 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 BAATQ14032 418 aaPredicted RBP12.5□□□□□ -0.41
CD44-227ENST00000528086 SLC30A10Q6XR72 485 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 IQCA1Q86XH1 822 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 C7orf61Q8IZ16 206 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 ADGRF4Q8IZF3 695 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 MSL3Q8N5Y2 521 aaKnown RBP12.5□□□□□ -0.41
CD44-227ENST00000528086 KLHDC9Q8NEP7 349 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 MORC4Q8TE76 937 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 MTMR8Q96EF0 704 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 CNNM2Q9H8M5 875 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 JMJD4Q9H9V9 463 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 PDGFCQ9NRA1 345 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 RBM27Q9P2N5 1060 aaKnown RBP12.5□□□□□ -0.41
CD44-227ENST00000528086 FBXO40Q9UH90 709 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 MAD2L2Q9UI95 211 aa12.5□□□□□ -0.41
CD44-227ENST00000528086 ZMYND8Q9ULU4 1186 aaPredicted RBP12.5□□□□□ -0.41
CD44-227ENST00000528086 WDR19Q8NEZ3 1342 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 POTEB2H3BUK9 544 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 CYTH3O43739 400 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 TROAPQ12815 778 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 SNX17Q15036 470 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 TAPT1Q6NXT6 567 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 CHRDL2Q6WN34 429 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 SENP6Q9GZR1 1112 aaPredicted RBP12.49□□□□□ -0.41
CD44-227ENST00000528086 KAT14Q9H8E8 782 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 COL20A1Q9P218 1284 aa12.49□□□□□ -0.41
CD44-227ENST00000528086 SYNRGQ9UMZ2 1314 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 EVI5O60447 810 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 SYN1P17600 705 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 ADCYAP1R1P41586 468 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 ATN1P54259 1190 aaPredicted RBP12.48□□□□□ -0.41
CD44-227ENST00000528086 CDC37Q16543 378 aaPredicted RBP12.48□□□□□ -0.41
CD44-227ENST00000528086 QRICH1Q2TAL8 776 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 CCDC144BQ3MJ40 725 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 GPATCH4Q5T3I0 446 aaKnown RBP12.48□□□□□ -0.41
CD44-227ENST00000528086 CREB3L3Q68CJ9 461 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 NSMFQ6X4W1 530 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 RASEFQ8IZ41 740 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 GDF15Q99988 308 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 XPNPEP3Q9NQH7 507 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 PHF24Q9UPV7 400 aa12.48□□□□□ -0.41
CD44-227ENST00000528086 GNEQ9Y223 722 aaKnown RBP12.48□□□□□ -0.41
CD44-227ENST00000528086 CTDP1Q9Y5B0 961 aaPredicted RBP12.48□□□□□ -0.41
CD44-227ENST00000528086 SLC34A2O95436 690 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 AKR1A1P14550 325 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 FXR1P51114 621 aaKnown RBP eCLIP12.47□□□□□ -0.41
CD44-227ENST00000528086 RPS6P62753 249 aaKnown RBP12.47□□□□□ -0.41
CD44-227ENST00000528086 NKX3-2P78367 333 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 GRM4Q14833 912 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 ASPRV1Q53RT3 343 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 CCDC178Q5BJE1 867 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 IFIT1BQ5T764 474 aaKnown RBP12.47□□□□□ -0.41
CD44-227ENST00000528086 SLC39A5Q6ZMH5 540 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 FERMT2Q96AC1 680 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 UBAC1Q9BSL1 405 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 UPF3AQ9H1J1 476 aaKnown RBP12.47□□□□□ -0.41
CD44-227ENST00000528086 ABHD16BQ9H3Z7 469 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 LY9Q9HBG7 655 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 ZHX1Q9UKY1 873 aaPredicted RBP12.47□□□□□ -0.41
CD44-227ENST00000528086 KIAA1217Q5T5P2 1943 aa12.47□□□□□ -0.41
CD44-227ENST00000528086 IFIT3O14879 490 aaKnown RBP12.46□□□□□ -0.41
CD44-227ENST00000528086 DUSP11O75319 330 aaKnown RBP12.46□□□□□ -0.41
CD44-227ENST00000528086 PARP1P09874 1014 aaKnown RBP12.46□□□□□ -0.41
CD44-227ENST00000528086 RARBP10826 455 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 SMPD1P17405 629 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 EDNRBP24530 442 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 ALDH5A1P51649 535 aaPredicted RBP12.46□□□□□ -0.41
CD44-227ENST00000528086 RTP1P59025 263 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 ADCK5Q3MIX3 580 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 USH1GQ495M9 461 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 SH3RF1Q7Z6J0 888 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 FBXO16Q8IX29 292 aaPredicted RBP12.46□□□□□ -0.41
CD44-227ENST00000528086 ARRDC4Q8NCT1 418 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 NCOA7Q8NI08 942 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 CCDC136Q96JN2 1154 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 MYL10Q9BUA6 226 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 RIOX1Q9H6W3 641 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 VAT1LQ9HCJ6 419 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 FAM184BQ9ULE4 1060 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 CNPY2Q9Y2B0 182 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 NR2E3Q9Y5X4 410 aa12.46□□□□□ -0.41
CD44-227ENST00000528086 KLRF2D3W0D1 207 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 SH2B2O14492 632 aaPredicted RBP12.45□□□□□ -0.42
CD44-227ENST00000528086 ITGB8P26012 769 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 MAGEA10P43363 369 aaPredicted RBP12.45□□□□□ -0.42
CD44-227ENST00000528086 GJA9P57773 515 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 TRIM60Q495X7 471 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 EEPD1Q7L9B9 569 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 KCNB2Q92953 911 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 LRRC2Q9BYS8 371 aa12.45□□□□□ -0.42
CD44-227ENST00000528086 GRIN2DO15399 1336 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 A0A1W2PQ45 241 aaPredicted RBP12.44□□□□□ -0.42
CD44-227ENST00000528086 A0A1W2PQY0 241 aa12.44□□□□□ -0.42
CD44-227ENST00000528086 RBM47A0AV96 593 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms