RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 ADGRF4Q8IZF3 695 aa18.99■□□□□ 0.63
LSM1-205ENST00000523511 RGS22Q8NE09 1264 aa18.99■□□□□ 0.63
LSM1-205ENST00000523511 KLRF2D3W0D1 207 aa18.98■□□□□ 0.63
LSM1-205ENST00000523511 DUSP11O75319 330 aaKnown RBP18.98■□□□□ 0.63
LSM1-205ENST00000523511 BAATQ14032 418 aaPredicted RBP18.98■□□□□ 0.63
LSM1-205ENST00000523511 C7orf61Q8IZ16 206 aa18.98■□□□□ 0.63
LSM1-205ENST00000523511 LSG1Q9H089 658 aaKnown RBP18.98■□□□□ 0.63
LSM1-205ENST00000523511 VAT1LQ9HCJ6 419 aa18.98■□□□□ 0.63
LSM1-205ENST00000523511 PRKAG2Q9UGJ0 569 aa18.98■□□□□ 0.63
LSM1-205ENST00000523511 MRPL11Q9Y3B7 192 aaKnown RBP18.98■□□□□ 0.63
LSM1-205ENST00000523511 BRCA2P51587 3418 aa18.98■□□□□ 0.63
LSM1-205ENST00000523511 ABCB11O95342 1321 aa18.98■□□□□ 0.63
LSM1-205ENST00000523511 TAL1P17542 331 aaPredicted RBP18.97■□□□□ 0.63
LSM1-205ENST00000523511 LRRC41Q15345 812 aa18.97■□□□□ 0.63
LSM1-205ENST00000523511 CDC37Q16543 378 aaPredicted RBP18.97■□□□□ 0.63
LSM1-205ENST00000523511 NOL8Q76FK4 1167 aaKnown RBP18.97■□□□□ 0.63
LSM1-205ENST00000523511 FBXO11Q86XK2 927 aa18.97■□□□□ 0.63
LSM1-205ENST00000523511 NUP133Q8WUM0 1156 aa18.97■□□□□ 0.63
LSM1-205ENST00000523511 TMEM87BQ96K49 555 aa18.97■□□□□ 0.63
LSM1-205ENST00000523511 TSEN34Q9BSV6 310 aaKnown RBP18.97■□□□□ 0.63
LSM1-205ENST00000523511 SOWAHBA6NEL2 793 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 CALML3P27482 149 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 KIF5BP33176 963 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 NECTIN1Q15223 517 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 CCDC144BQ3MJ40 725 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 USH1GQ495M9 461 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 CREB3L3Q68CJ9 461 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 IQSEC1Q6DN90 963 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 NFXL1Q6ZNB6 911 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 PCSK9Q8NBP7 692 aaKnown RBP18.96■□□□□ 0.63
LSM1-205ENST00000523511 DNERQ8NFT8 737 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 AMNQ9BXJ7 453 aa18.96■□□□□ 0.63
LSM1-205ENST00000523511 MOXD2PA6NHM9 499 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 CCDC69A6NI79 296 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 SLC27A2O14975 620 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 TNFAIP2Q03169 654 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 KRT32Q14532 448 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 SYNE3Q6ZMZ3 975 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 CTCFLQ8NI51 663 aaPredicted RBP18.95■□□□□ 0.62
LSM1-205ENST00000523511 MAP3K14Q99558 947 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 AP5M1Q9H0R1 490 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 VTA1Q9NP79 307 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 PARP14Q460N5 1801 aa18.95■□□□□ 0.62
LSM1-205ENST00000523511 PALM3A6NDB9 673 aaPredicted RBP18.94■□□□□ 0.62
LSM1-205ENST00000523511 NFIBO00712 420 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 PRC1O43663 620 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 ZEB2O60315 1214 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 PGK1P00558 417 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 CALM1P0DP23 149 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 CALM2P0DP24 149 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 CALM3P0DP25 149 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 ADCYAP1R1P41586 468 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 GNAQP50148 359 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 ATN1P54259 1190 aaPredicted RBP18.94■□□□□ 0.62
LSM1-205ENST00000523511 SLC39A5Q6ZMH5 540 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 CHST3Q7LGC8 479 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 MB21D2Q8IYB1 491 aaPredicted RBP18.94■□□□□ 0.62
LSM1-205ENST00000523511 SAMD3Q8N6K7 520 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 IGDCC4Q8TDY8 1250 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 CLEC4DQ8WXI8 215 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 LZTS2Q9BRK4 669 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 JMJD4Q9H9V9 463 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 PPP4R2Q9NY27 417 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 MAP3K20Q9NYL2 800 aaKnown RBP18.94■□□□□ 0.62
LSM1-205ENST00000523511 MAD2L2Q9UI95 211 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 PHF24Q9UPV7 400 aa18.94■□□□□ 0.62
LSM1-205ENST00000523511 COLQQ9Y215 455 aaPredicted RBP18.94■□□□□ 0.62
LSM1-205ENST00000523511 COL11A1P12107 1806 aaPredicted RBP18.93■□□□□ 0.62
LSM1-205ENST00000523511 ZBTB5O15062 677 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 C6orf222P0C671 652 aaPredicted RBP18.93■□□□□ 0.62
LSM1-205ENST00000523511 RPS6P62753 249 aaKnown RBP18.93■□□□□ 0.62
LSM1-205ENST00000523511 PDE4DQ08499 809 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 GRM4Q14833 912 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 LRRC26Q2I0M4 334 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 QRICH1Q2TAL8 776 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 HABP4Q5JVS0 413 aaKnown RBP18.93■□□□□ 0.62
LSM1-205ENST00000523511 CHRDL2Q6WN34 429 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 STOX1Q6ZVD7 989 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 FGD4Q96M96 766 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 CPVLQ9H3G5 476 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 Q9Y3F1 56 aa18.93■□□□□ 0.62
LSM1-205ENST00000523511 DDAH1O94760 285 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 HMGB1P09429 215 aaKnown RBP18.92■□□□□ 0.62
LSM1-205ENST00000523511 LIFRP42702 1097 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 ALDH5A1P51649 535 aaPredicted RBP18.92■□□□□ 0.62
LSM1-205ENST00000523511 TROAPQ12815 778 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 GNASQ5JWF2 1037 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 C1orf53Q5VUE5 145 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 STAG2Q8N3U4 1231 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 MORC4Q8TE76 937 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 VTI1AQ96AJ9 217 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 GLT1D1Q96MS3 346 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 NEK1Q96PY6 1258 aa18.92■□□□□ 0.62
LSM1-205ENST00000523511 LBHD1Q9BQE6 289 aaPredicted RBP18.92■□□□□ 0.62
LSM1-205ENST00000523511 A0A1W2PPC1 479 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 REC8O95072 547 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 SMARCA1P28370 1054 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 GJA9P57773 515 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 KCNA10Q16322 511 aa18.91■□□□□ 0.62
LSM1-205ENST00000523511 BRDTQ58F21 947 aaPredicted RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms