RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ALAS1P13196 640 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 IRX1P78414 480 aaPredicted RBP14.48□□□□□ -0.09
TCOF1-213ENST00000514442 MECOMQ03112 1051 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 SLFN13Q68D06 897 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 SMIM5Q71RC9 77 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 FNBP1Q96RU3 617 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 VCXQ9H320 206 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 HAUS4Q9H6D7 363 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 MED14O60244 1454 aa14.48□□□□□ -0.09
TCOF1-213ENST00000514442 SMTNP53814 917 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 TBC1D8O95759 1140 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 PTGDRQ13258 359 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 NECTIN1Q15223 517 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 MRPL44Q9H9J2 332 aaKnown RBP14.47□□□□□ -0.09
TCOF1-213ENST00000514442 TSNAXIP1Q2TAA8 658 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 FUCA2Q9BTY2 467 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 PLVAPQ9BX97 442 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 ZSWIM5Q9P217 1185 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 CPS1P31327 1500 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 NBPF26B4DH59 902 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 CALUO43852 315 aaPredicted RBP14.47□□□□□ -0.09
TCOF1-213ENST00000514442 GDF11O95390 407 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 CYP19A1P11511 503 aaPredicted RBP14.47□□□□□ -0.09
TCOF1-213ENST00000514442 MAP3K9P80192 1104 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 GKAP1Q5VSY0 366 aaPredicted RBP14.47□□□□□ -0.09
TCOF1-213ENST00000514442 NBPF10Q6P3W6 841 aaKnown RBP14.47□□□□□ -0.09
TCOF1-213ENST00000514442 NBPF15Q8N660 670 aa14.47□□□□□ -0.09
TCOF1-213ENST00000514442 NOP56O00567 594 aaKnown RBP14.46□□□□□ -0.09
TCOF1-213ENST00000514442 IQCB1Q15051 598 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 NEK8Q86SG6 692 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 CHURC1Q8WUH1 139 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 AIFM3Q96NN9 605 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 C1orf167Q5SNV9 1468 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 BBOX1O75936 387 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 ELF1P32519 619 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 PTPN21Q16825 1174 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 ABCB5Q2M3G0 1257 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 TOGARAM2Q6ZUX3 1019 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 LMBR1Q8WVP7 490 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 BSDC1Q9NW68 430 aaPredicted RBP14.46□□□□□ -0.09
TCOF1-213ENST00000514442 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.46□□□□□ -0.098e-6■■□□□ 13.6
TCOF1-213ENST00000514442 MXRA7P84157 204 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 GRAPQ13588 217 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 FBXW10Q5XX13 1052 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 KCTD1Q719H9 257 aa14.46□□□□□ -0.09
TCOF1-213ENST00000514442 GRAPLQ8TC17 118 aaPredicted RBP14.46□□□□□ -0.09
TCOF1-213ENST00000514442 SYMPKQ92797 1274 aaKnown RBP14.46□□□□□ -0.09
TCOF1-213ENST00000514442 SH2B2O14492 632 aaPredicted RBP14.46□□□□□ -0.1
TCOF1-213ENST00000514442 GAS7O60861 476 aa14.46□□□□□ -0.1
TCOF1-213ENST00000514442 KCTD16Q68DU8 428 aa14.46□□□□□ -0.1
TCOF1-213ENST00000514442 ARHGAP27Q6ZUM4 889 aa14.46□□□□□ -0.1
TCOF1-213ENST00000514442 PAGR1Q9BTK6 254 aa14.46□□□□□ -0.1
TCOF1-213ENST00000514442 TESPA1A2RU30 521 aaPredicted RBP14.45□□□□□ -0.1
TCOF1-213ENST00000514442 SOWAHDA6NJG2 315 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 COBLO75128 1261 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 RPS6KA4O75676 772 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 SLC16A2P36021 539 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 CCDC38Q502W7 563 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 ZNF772Q68DY9 489 aaPredicted RBP14.45□□□□□ -0.1
TCOF1-213ENST00000514442 TTC16Q8NEE8 873 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 CSRNP1Q96S65 589 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 PIK3C2BO00750 1634 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 OR52Z1P0C646 297 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 CA8P35219 290 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 KIF3CO14782 793 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 RAD17O75943 681 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 FMNL1O95466 1100 aaPredicted RBP14.45□□□□□ -0.1
TCOF1-213ENST00000514442 COL15A1P39059 1388 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 AFF2P51816 1311 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 RNASE9P60153 205 aaKnown RBP14.45□□□□□ -0.1
TCOF1-213ENST00000514442 TNFAIP1Q13829 316 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 TBC1D9BQ66K14 1250 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 GPBP1Q86WP2 473 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 FBXO11Q86XK2 927 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 RDH13Q8NBN7 331 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 ATP1A3P13637 1013 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 NR5A1Q13285 461 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 ZMYND10O75800 440 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 EPHB4P54760 987 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 C6orf163Q5TEZ5 329 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 HOOK2Q96ED9 719 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 SAAL1Q96ER3 474 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 SH3GL3Q99963 347 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 FAM207AQ9NSI2 230 aaPredicted RBP14.45□□□□□ -0.1
TCOF1-213ENST00000514442 PCDHA1Q9Y5I3 950 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 IVNS1ABPQ9Y6Y0 642 aa14.45□□□□□ -0.1
TCOF1-213ENST00000514442 TLDC2A0PJX2 215 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 MMP10P09238 476 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 HNRNPH1P31943 449 aaKnown RBP14.44□□□□□ -0.1
TCOF1-213ENST00000514442 PLCB3Q01970 1234 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 SETDB1Q15047 1291 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 CFAP221Q4G0U5 840 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 ARMC2Q8NEN0 867 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 PANX2Q96RD6 677 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 RASAL2Q9UJF2 1139 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 PCDHA12Q9UN75 941 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 RIMBP3CA6NJZ7 1639 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 RIMBP3BA6NNM3 1639 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 RIMBP3Q9UFD9 1639 aa14.44□□□□□ -0.1
TCOF1-213ENST00000514442 USP17L3A6NCW0 530 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms