RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 DEFB128Q7Z7B8 93 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 HERC6Q8IVU3 1022 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 GJD3Q8N144 294 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 FAM133AQ8N9E0 248 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 TET1Q8NFU7 2136 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.88□□□□□ -0.19
RNF4-216ENST00000511859 SNX27Q96L92 541 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 NUP88Q99567 741 aaPredicted RBP13.88□□□□□ -0.19
RNF4-216ENST00000511859 FEM1BQ9UK73 627 aa13.88□□□□□ -0.19
RNF4-216ENST00000511859 CYP2D7A0A087X1C5 515 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 LPXNO60711 386 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 SMPD1P17405 629 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 PSMC6P62333 389 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 CNTN2Q02246 1040 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 TMEM57Q8N5G2 664 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 KIFC2Q96AC6 838 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.87□□□□□ -0.19
RNF4-216ENST00000511859 TNNQ9UQP3 1299 aa13.87□□□□□ -0.19
RNF4-216ENST00000511859 TRIP12Q14669 1992 aaPredicted RBP13.87□□□□□ -0.19
RNF4-216ENST00000511859 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.86□□□□□ -0.19
RNF4-216ENST00000511859 GOLIM4O00461 696 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 NDUFB10O96000 172 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 CSPP1Q1MSJ5 1256 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 FAM178BQ8IXR5 827 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 ACAD9Q9H845 621 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 COG6Q9Y2V7 657 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 TNKSO95271 1327 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 MYH4Q9Y623 1939 aa13.86□□□□□ -0.19
RNF4-216ENST00000511859 PITPNM1O00562 1244 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 BAIAP3O94812 1187 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 MBD4O95243 580 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 CYP2C9P11712 490 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 ADD2P35612 726 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 NHLH1Q02575 133 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 TAPT1Q6NXT6 567 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 CTR9Q6PD62 1173 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 RETREG2Q8NC44 543 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 MKL1Q969V6 931 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 UIMC1Q96RL1 719 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 C1orf115Q9H7X2 142 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 TRMT13Q9NUP7 481 aaKnown RBP13.85□□□□□ -0.19
RNF4-216ENST00000511859 POLR3EQ9NVU0 708 aa13.85□□□□□ -0.19
RNF4-216ENST00000511859 GREB1LQ9C091 1923 aaPredicted RBP13.85□□□□□ -0.19
RNF4-216ENST00000511859 SOWAHBA6NEL2 793 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 IQCF3P0C7M6 154 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 LEXMQ3ZCV2 418 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 HSP90AB4PQ58FF6 505 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 ZKSCAN2Q63HK3 967 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 RPAP2Q8IXW5 612 aaPredicted RBP13.84□□□□□ -0.19
RNF4-216ENST00000511859 DNAJC2Q99543 621 aaKnown RBP13.84□□□□□ -0.19
RNF4-216ENST00000511859 FTOQ9C0B1 505 aaKnown RBP eCLIP13.84□□□□□ -0.19
RNF4-216ENST00000511859 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.84□□□□□ -0.19
RNF4-216ENST00000511859 UBE2ZQ9H832 354 aaPredicted RBP13.84□□□□□ -0.19
RNF4-216ENST00000511859 MKNK2Q9HBH9 465 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 A1CFQ9NQ94 594 aaKnown RBP13.84□□□□□ -0.19
RNF4-216ENST00000511859 HOMER2Q9NSB8 354 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 CLIP2Q9UDT6 1046 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 SYNPO2Q9UMS6 1093 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 ZBED9Q6R2W3 1325 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 TRIOO75962 3097 aa13.84□□□□□ -0.19
RNF4-216ENST00000511859 ARHGEF15O94989 841 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 UBE3CQ15386 1083 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 TKFCQ3LXA3 575 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 VTA1Q9NP79 307 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 PDGFCQ9NRA1 345 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 ARPP21Q9UBL0 812 aaPredicted RBP13.83□□□□□ -0.19
RNF4-216ENST00000511859 EXOC6BQ9Y2D4 811 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 SLC4A4Q9Y6R1 1079 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 ZNF318Q5VUA4 2279 aa13.83□□□□□ -0.19
RNF4-216ENST00000511859 SCN10AQ9Y5Y9 1956 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 CCER2I3L3R5 266 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 RASA1P20936 1047 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 SSTR3P32745 418 aaPredicted RBP13.83□□□□□ -0.2
RNF4-216ENST00000511859 KCNJ6P48051 423 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 CPT1AP50416 773 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 PURAQ00577 322 aaKnown RBP13.83□□□□□ -0.2
RNF4-216ENST00000511859 BFSP2Q13515 415 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 PUS10Q3MIT2 529 aaKnown RBP13.83□□□□□ -0.2
RNF4-216ENST00000511859 DUSP28Q4G0W2 176 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 KIAA1211Q6ZU35 1233 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 CLASRPQ8N2M8 674 aaKnown RBP13.83□□□□□ -0.2
RNF4-216ENST00000511859 IL1RAPL2Q9NP60 686 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 GPHNQ9NQX3 736 aaPredicted RBP13.83□□□□□ -0.2
RNF4-216ENST00000511859 PAG1Q9NWQ8 432 aa13.83□□□□□ -0.2
RNF4-216ENST00000511859 LRRFIP1Q32MZ4 808 aaKnown RBP13.82□□□□□ -0.2
RNF4-216ENST00000511859 SBK1Q52WX2 424 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 NFRKBQ6P4R8 1299 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 EEPD1Q7L9B9 569 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 GMCL1P1Q8NEA9 526 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.82□□□□□ -0.2
RNF4-216ENST00000511859 RHPN1Q8TCX5 695 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 MORC4Q8TE76 937 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 CHURC1Q8WUH1 139 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 FBXL18Q96ME1 805 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 TRERF1Q96PN7 1200 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 MTG1Q9BT17 334 aaPredicted RBP13.82□□□□□ -0.2
RNF4-216ENST00000511859 ZBED2Q9BTP6 218 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 SUGCTQ9HAC7 445 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 RNF146Q9NTX7 359 aa13.82□□□□□ -0.2
RNF4-216ENST00000511859 USP34Q70CQ2 3546 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms