RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 ABHD8Q96I13 439 aa13.25□□□□□ -0.29
LIMCH1-210ENST00000509454 PIGSQ96S52 555 aa13.25□□□□□ -0.29
LIMCH1-210ENST00000509454 MYH6P13533 1939 aa13.25□□□□□ -0.29
LIMCH1-210ENST00000509454 PTPDC1A2A3K4 754 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 ZBTB5O15062 677 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 UBXN2AP68543 259 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 STK3Q13188 491 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 IRF5Q13568 498 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 TOB2Q14106 344 aaPredicted RBP13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 MUM1L1Q5H9M0 696 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 TMTC3Q6ZXV5 915 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 ABRAQ8N0Z2 381 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 AMNQ9BXJ7 453 aa13.24□□□□□ -0.29
LIMCH1-210ENST00000509454 CCDC196A0A1B0GTZ2 297 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 COBLO75128 1261 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 CCT2P78371 535 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 CCL14Q16627 93 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 TRMT44Q8IYL2 757 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 SRBD1Q8N5C6 995 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 NPLOC4Q8TAT6 608 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 SPZ1Q9BXG8 430 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 RIOX1Q9H6W3 641 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 ABCB11O95342 1321 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 PNMA6FA0A0J9YX94 578 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 hCG_1642624A0A1W2PR95 340 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 POTEB2H3BUK9 544 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 NFIBO00712 420 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 CYTH3O43739 400 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 HMGCRP04035 888 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 INHAP05111 366 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 XRCC5P13010 732 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 CALML3P27482 149 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 ANKRD1Q15327 319 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 SLC35G1Q2M3R5 365 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 MFSD14CQ5VZR4 134 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 PXYLP1Q8TE99 480 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 TRIB2Q92519 343 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 USP6NLQ92738 828 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 A1CFQ9NQ94 594 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 MRPL11Q9Y3B7 192 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 PCDHA1Q9Y5I3 950 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 PFASO15067 1338 aa13.23□□□□□ -0.29
LIMCH1-210ENST00000509454 ZNFX1Q9P2E3 1918 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 CPLX1O14810 134 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 PDIA3P30101 505 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 CDC27P30260 824 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 RCAN1P53805 252 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 AK2P54819 239 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 AKAP17AQ02040 695 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 TRAF1Q13077 416 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 RNF207Q6ZRF8 634 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 FBXL16Q8N461 479 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 AGXT2Q9BYV1 514 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 BACH2Q9BYV9 841 aa13.22□□□□□ -0.29
LIMCH1-210ENST00000509454 SMCHD1A6NHR9 2005 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 SMARCA1P28370 1054 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 ADD1P35611 737 aaKnown RBP13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 TRIM32Q13049 653 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 BAATQ14032 418 aaPredicted RBP13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 PPP2R5BQ15173 497 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 HEATR3Q7Z4Q2 680 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 MCF2L2Q86YR7 1114 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 MTMR8Q96EF0 704 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 TMEM106CQ9BVX2 250 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 SLKQ9H2G2 1235 aaPredicted RBP13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 NCOA5Q9HCD5 579 aaKnown RBP13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 FLRT1Q9NZU1 646 aa13.21□□□□□ -0.29
LIMCH1-210ENST00000509454 ZNF236Q9UL36 1845 aa13.21□□□□□ -0.3
LIMCH1-210ENST00000509454 CNTNAP5Q8WYK1 1306 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 PPP1R11O60927 126 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 PPFIA3O75145 1194 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CFBP00751 764 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 HOXC6P09630 235 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 PRKAR2AP13861 404 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CNGA1P29973 690 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CYP2C19P33261 490 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 RBM25P49756 843 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CNTN2Q02246 1040 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 ZNF792Q3KQV3 632 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CPLX2Q6PUV4 134 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CLEC4DQ8WXI8 215 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 ARMC5Q96C12 935 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 ZNF274Q96GC6 653 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 MAML3Q96JK9 1138 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 ZNF333Q96JL9 665 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 RNF208Q9H0X6 261 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 CYP39A1Q9NYL5 469 aa13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 V9GY48 417 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-210ENST00000509454 ATXN8OSP0DMR3 200 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 CCL5P13501 91 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 MTFR1Q15390 333 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 SLC30A10Q6XR72 485 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 GPKOWQ92917 476 aaPredicted RBP eCLIP13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 IL17RAQ96F46 866 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 SLC26A6Q9BXS9 759 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 UNC93B1Q9H1C4 597 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 FAM217BQ9NTX9 383 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 TPCN1Q9ULQ1 816 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 PLXNA1Q9UIW2 1896 aa13.19□□□□□ -0.3
LIMCH1-210ENST00000509454 SOX10P56693 466 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms