RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 RNF146Q9NTX7 359 aa10.6□□□□□ -0.71
NUP54-207ENST00000508583 RBM27Q9P2N5 1060 aaKnown RBP10.6□□□□□ -0.71
NUP54-207ENST00000508583 GJD2Q9UKL4 321 aa10.6□□□□□ -0.71
NUP54-207ENST00000508583 HPS5Q9UPZ3 1129 aa10.6□□□□□ -0.71
NUP54-207ENST00000508583 MRPL11Q9Y3B7 192 aaKnown RBP10.6□□□□□ -0.71
NUP54-207ENST00000508583 MYH6P13533 1939 aa10.6□□□□□ -0.71
NUP54-207ENST00000508583 ZNF536O15090 1300 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 PNMA6FA0A0J9YX94 578 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 B4DLN1 442 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 CAPN2P17655 700 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 CYP2B6P20813 491 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 MRPL12P52815 198 aaKnown RBP10.59□□□□□ -0.71
NUP54-207ENST00000508583 EVCP57679 992 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 OLFML2BQ68BL8 750 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 TMTC3Q6ZXV5 915 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 STAG2Q8N3U4 1231 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 USP6NLQ92738 828 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 ARMC5Q96C12 935 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 ZNF274Q96GC6 653 aaPredicted RBP10.59□□□□□ -0.71
NUP54-207ENST00000508583 AGBL1Q96MI9 1066 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 MYL10Q9BUA6 226 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 ALDH8A1Q9H2A2 487 aaPredicted RBP10.59□□□□□ -0.71
NUP54-207ENST00000508583 JMJD4Q9H9V9 463 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 VAT1LQ9HCJ6 419 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 GPHNQ9NQX3 736 aaPredicted RBP10.59□□□□□ -0.71
NUP54-207ENST00000508583 PLSCR2Q9NRY7 297 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 GABRQQ9UN88 632 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 NID2Q14112 1375 aa10.59□□□□□ -0.71
NUP54-207ENST00000508583 LOC102724159A0A0B4J2E5 919 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 hCG_1984214I3L0E3 225 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 SEC24BO95487 1268 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 RBM25P49756 843 aaKnown RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 AKAP17AQ02040 695 aaKnown RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 APOBRQ0VD83 1088 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 PWP2Q15269 919 aaKnown RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 QRICH1Q2TAL8 776 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 USH1GQ495M9 461 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 ZNF467Q7Z7K2 595 aaPredicted RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 HOMER1Q86YM7 354 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 TEX2Q8IWB9 1127 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 ZNF713Q8N859 430 aaPredicted RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 RGS22Q8NE09 1264 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 MTMR8Q96EF0 704 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 ABHD8Q96I13 439 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 MAP3K20Q9NYL2 800 aaKnown RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 ADD3Q9UEY8 706 aaKnown RBP10.58□□□□□ -0.72
NUP54-207ENST00000508583 RIPK3Q9Y572 518 aa10.58□□□□□ -0.72
NUP54-207ENST00000508583 PTPDC1A2A3K4 754 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 POTEB2H3BUK9 544 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 CPLX1O14810 134 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 ST18O60284 1047 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 CDKL5O76039 1030 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 CPA1P15085 419 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 RXRAP19793 462 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 NEK4P51957 841 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 SNAP25P60880 206 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 RABEP1Q15276 862 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 NSMFQ6X4W1 530 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 RNF207Q6ZRF8 634 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 CCDC144CPQ8IYA2 1237 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 ZNF333Q96JL9 665 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 TMEM106CQ9BVX2 250 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 NRBP1Q9UHY1 535 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 BRPF3Q9ULD4 1205 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 PCDHA1Q9Y5I3 950 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 SYNGAP1Q96PV0 1343 aa10.57□□□□□ -0.72
NUP54-207ENST00000508583 ZNFX1Q9P2E3 1918 aaKnown RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 CENPFP49454 3210 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 DNAJC25-GNG10A0A024R161 153 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 ASB14A6NK59 587 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 MSCO60682 206 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 INHAP05111 366 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 ELNP15502 786 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 COL9A3Q14050 684 aaPredicted RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 TOB2Q14106 344 aaPredicted RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 TRIM22Q8IYM9 498 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 SRBD1Q8N5C6 995 aaKnown RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 SH3TC2Q8TF17 1288 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 CCDC12Q8WUD4 166 aaPredicted RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 CUL5Q93034 780 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 MAML3Q96JK9 1138 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 PIGSQ96S52 555 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 GLT8D2Q9H1C3 349 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 SLKQ9H2G2 1235 aaPredicted RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 CPVLQ9H3G5 476 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 A1CFQ9NQ94 594 aaKnown RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 CYP39A1Q9NYL5 469 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 BAZ2BQ9UIF8 2168 aaKnown RBP10.56□□□□□ -0.72
NUP54-207ENST00000508583 RPTORQ8N122 1335 aa10.56□□□□□ -0.72
NUP54-207ENST00000508583 PLXNA1Q9UIW2 1896 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 RBBP6Q7Z6E9 1792 aaKnown RBP10.55□□□□□ -0.72
NUP54-207ENST00000508583 CYTH3O43739 400 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 COBLO75128 1261 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 PLEKHA8P1O95397 391 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 PGK2P07205 417 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 PDIA3P30101 505 aaKnown RBP10.55□□□□□ -0.72
NUP54-207ENST00000508583 ZNF792Q3KQV3 632 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 MUM1L1Q5H9M0 696 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 PPP1R18Q6NYC8 613 aa10.55□□□□□ -0.72
NUP54-207ENST00000508583 DNERQ8NFT8 737 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms