RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 TMEM67Q5HYA8 995 aa15.32■□□□□ 0.04
TCOF1-209ENST00000506630 GJC2Q5T442 439 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-209ENST00000506630 BTNL9Q6UXG8 535 aa15.32■□□□□ 0.04
TCOF1-209ENST00000506630 ABRAQ8N0Z2 381 aa15.32■□□□□ 0.04
TCOF1-209ENST00000506630 MAFAQ8NHW3 353 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-209ENST00000506630 PRDM5Q9NQX1 630 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-209ENST00000506630 HOMER2Q9NSB8 354 aa15.32■□□□□ 0.04
TCOF1-209ENST00000506630 RIPK3Q9Y572 518 aa15.32■□□□□ 0.04
TCOF1-209ENST00000506630 DNAH12Q6ZR08 3092 aa15.32■□□□□ 0.04
TCOF1-209ENST00000506630 PRC1O43663 620 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 REC8O95072 547 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 MYCNP04198 464 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-209ENST00000506630 PARP1P09874 1014 aaKnown RBP15.31■□□□□ 0.04
TCOF1-209ENST00000506630 MCM5P33992 734 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 SHHQ15465 462 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 ASPRV1Q53RT3 343 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 PRAMEF19Q5SWL8 479 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 SLC39A5Q6ZMH5 540 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 AGBL1Q96MI9 1066 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 RANBP17Q9H2T7 1088 aaKnown RBP15.31■□□□□ 0.04
TCOF1-209ENST00000506630 SEMA6BQ9H3T3 888 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 SLC5A4Q9NY91 659 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 CCPG1Q9ULG6 757 aa15.31■□□□□ 0.04
TCOF1-209ENST00000506630 ZNF536O15090 1300 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 PGK2P07205 417 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 ALAS1P13196 640 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 CYBAP13498 195 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 CHST13Q8NET6 341 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 UBA5Q9GZZ9 404 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 CPVLQ9H3G5 476 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 ACAD9Q9H845 621 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 SENP2Q9HC62 589 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 RNF146Q9NTX7 359 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 FBXO40Q9UH90 709 aa15.3■□□□□ 0.04
TCOF1-209ENST00000506630 DHX16O60231 1041 aaKnown RBP15.29■□□□□ 0.04
TCOF1-209ENST00000506630 ICAM1P05362 532 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 TAL1P17542 331 aaPredicted RBP15.29■□□□□ 0.04
TCOF1-209ENST00000506630 SMAD3P84022 425 aaKnown RBP15.29■□□□□ 0.04
TCOF1-209ENST00000506630 C9orf50Q5SZB4 431 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 ANO1Q5XXA6 986 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 OLFML2BQ68BL8 750 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 ANKRD35Q8N283 1001 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 SYMPKQ92797 1274 aaKnown RBP15.29■□□□□ 0.04
TCOF1-209ENST00000506630 BADQ92934 168 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 DDX11Q96FC9 970 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 LRRC2Q9BYS8 371 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 LY9Q9HBG7 655 aa15.29■□□□□ 0.04
TCOF1-209ENST00000506630 SH2B2O14492 632 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-209ENST00000506630 SEPT4O43236 478 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 COL9A3Q14050 684 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-209ENST00000506630 KRT32Q14532 448 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 TKFCQ3LXA3 575 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 NFXL1Q6ZNB6 911 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 CATIPQ7Z7H3 387 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 RASEFQ8IZ41 740 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 STAG2Q8N3U4 1231 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 IGDCC4Q8TDY8 1250 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 MAML3Q96JK9 1138 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 TMEM87BQ96K49 555 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 TRERF1Q96PN7 1200 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 NEK1Q96PY6 1258 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 MTA3Q9BTC8 594 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 GPHNQ9NQX3 736 aaPredicted RBP15.28■□□□□ 0.04
TCOF1-209ENST00000506630 LRRC37A2A6NM11 1700 aa15.28■□□□□ 0.04
TCOF1-209ENST00000506630 CCDC69A6NI79 296 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 FOSL2P15408 326 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 HSPA4P34932 840 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 ADCYAP1R1P41586 468 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 GRM4Q14833 912 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 CDC37Q16543 378 aaPredicted RBP15.27■□□□□ 0.04
TCOF1-209ENST00000506630 ADCK5Q3MIX3 580 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 TSGA10IPQ3SY00 556 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 TRIM60Q495X7 471 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 ADGRF4Q8IZF3 695 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 NUP133Q8WUM0 1156 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 MYLIPQ8WY64 445 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 PRDM6Q9NQX0 595 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 MAD2L2Q9UI95 211 aa15.27■□□□□ 0.04
TCOF1-209ENST00000506630 KLRF2D3W0D1 207 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 SNX17Q15036 470 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 ZNF792Q3KQV3 632 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 MUM1L1Q5H9M0 696 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 C1orf53Q5VUE5 145 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.26■□□□□ 0.03
TCOF1-209ENST00000506630 ZNF654Q8IZM8 581 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 FERMT2Q96AC1 680 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 TCEANC2Q96MN5 208 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 MYL10Q9BUA6 226 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 VAT1LQ9HCJ6 419 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 A1CFQ9NQ94 594 aaKnown RBP15.26■□□□□ 0.03
TCOF1-209ENST00000506630 PDLIM7Q9NR12 457 aa15.26■□□□□ 0.03
TCOF1-209ENST00000506630 WDR19Q8NEZ3 1342 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 TMEM265A0A087WTH1 108 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 PALM3A6NDB9 673 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-209ENST00000506630 DDAH1O94760 285 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 TROAPQ12815 778 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 LRRC41Q15345 812 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 USH1GQ495M9 461 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 NSMFQ6X4W1 530 aa15.25■□□□□ 0.03
TCOF1-209ENST00000506630 TMTC2Q8N394 836 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms