RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	NSMF	Q6X4W1	530 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	TBC1D10C	Q8IV04	446 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	CCDC144CP	Q8IYA2	1237 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	FAM133A	Q8N9E0	248 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	KAT14	Q9H8E8	782 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	GPCPD1	Q9NPB8	672 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	STARD7	Q9NQZ5	370 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	TACC3	Q9Y6A5	838 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	RANBP2	P49792	3224 aa	Known RBP	12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	LTBP2	Q14767	1821 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	NEDD4	P46934	1319 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	MROH7	Q68CQ1	1323 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018	SYNRG	Q9UMZ2	1314 aa		12.22	□□□□□ -0.45
NR1I3-222	ENST00000506018		A0A1W2PQ45	241 aa	Predicted RBP	12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018		A0A1W2PQY0	241 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018		B4DLN1	442 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	KDM4A	O75164	1064 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	C6orf222	P0C671	652 aa	Predicted RBP	12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	SLC16A2	P36021	539 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	MRPL12	P52815	198 aa	Known RBP	12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	ZNF543	Q08ER8	600 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	TRDN	Q13061	729 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	CCDC144B	Q3MJ40	725 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	LRIT3	Q3SXY7	679 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	TRIM60	Q495X7	471 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	GPR153	Q6NV75	609 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	NOL8	Q76FK4	1167 aa	Known RBP	12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	GLT1D1	Q96MS3	346 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	UBAC1	Q9BSL1	405 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	DNAH12	Q6ZR08	3092 aa		12.21	□□□□□ -0.45
NR1I3-222	ENST00000506018	LOC102724159	A0A0B4J2E5	919 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	PTPDC1	A2A3K4	754 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	ZEB2	O60315	1214 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	ADAMTS4	O75173	837 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	CST5	P28325	142 aa	Predicted RBP	12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	VASP	P50552	380 aa	Predicted RBP	12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	ACLY	P53396	1101 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	SNAP25	P60880	206 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	CNTN2	Q02246	1040 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	PWP2	Q15269	919 aa	Known RBP	12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	TTBK2	Q6IQ55	1244 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	PNMA1	Q8ND90	353 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	VTI1A	Q96AJ9	217 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	ZKSCAN3	Q9BRR0	538 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	CYP39A1	Q9NYL5	469 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	WDR19	Q8NEZ3	1342 aa		12.2	□□□□□ -0.46
NR1I3-222	ENST00000506018	DCDC2C	A8MYV0	355 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018		B4E1Z4	1266 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	CLTB	P09497	229 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	SNHG28	P0DPA3	235 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	GJA9	P57773	515 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	TNFAIP2	Q03169	654 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	KCNA10	Q16322	511 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	ASPRV1	Q53RT3	343 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	MUM1L1	Q5H9M0	696 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	GNAS	Q5JWF2	1037 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	RASGRP2	Q7LDG7	609 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	KLHDC9	Q8NEP7	349 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	LENG1	Q96BZ8	264 aa	Predicted RBP	12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	FGD4	Q96M96	766 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	AP5M1	Q9H0R1	490 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	VTA1	Q9NP79	307 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	LRRC37A2	A6NM11	1700 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	ELP1	O95163	1332 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	LCT	P09848	1927 aa		12.19	□□□□□ -0.46
NR1I3-222	ENST00000506018	ERICH2	A1L162	156 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	SOWAHB	A6NEL2	793 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	DHX16	O60231	1041 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	PQBP1	O60828	265 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	TLE2	Q04725	743 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	IFIT1B	Q5T764	474 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	IQSEC1	Q6DN90	963 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	RNF207	Q6ZRF8	634 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	TOX2	Q96NM4	488 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	MAF1	Q9H063	256 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	UPF3A	Q9H1J1	476 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	PDLIM7	Q9NR12	457 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	ZSWIM5	Q9P217	1185 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	TNKS	O95271	1327 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018		A0A0U1RQG5	324 aa	Predicted RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	TLR3	O15455	904 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	CABYR	O75952	493 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	ASGR1	P07306	291 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	PARP1	P09874	1014 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	GSPT1	P15170	499 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	RAG1	P15918	1043 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	CALML3	P27482	149 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	PDE4A	P27815	886 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	BAAT	Q14032	418 aa	Predicted RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	SART3	Q15020	963 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	RALYL	Q86SE5	291 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	ANKS1A	Q92625	1134 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	LRCH3	Q96II8	777 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	SEZ6L	Q9BYH1	1024 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	TMEM39A	Q9NV64	488 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018		Q9Y3F1	56 aa		12.18	□□□□□ -0.46
NR1I3-222	ENST00000506018	SOX1	O00570	391 aa	Predicted RBP	12.17	□□□□□ -0.46
NR1I3-222	ENST00000506018	NFIB	O00712	420 aa		12.17	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms