RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ADGRF4Q8IZF3 695 aa28.84■■■□□ 2.21
UPF3A-209ENST00000492270 CLEC4DQ8WXI8 215 aa28.84■■■□□ 2.21
UPF3A-209ENST00000492270 WDR19Q8NEZ3 1342 aa28.84■■■□□ 2.21
UPF3A-209ENST00000492270 AKR1A1P14550 325 aa28.83■■■□□ 2.21
UPF3A-209ENST00000492270 NECTIN1Q15223 517 aa28.83■■■□□ 2.21
UPF3A-209ENST00000492270 USH1GQ495M9 461 aa28.83■■■□□ 2.21
UPF3A-209ENST00000492270 CREB3L3Q68CJ9 461 aa28.83■■■□□ 2.21
UPF3A-209ENST00000492270 C7orf61Q8IZ16 206 aa28.83■■■□□ 2.21
UPF3A-209ENST00000492270 SENP6Q9GZR1 1112 aaPredicted RBP28.83■■■□□ 2.21
UPF3A-209ENST00000492270 NR2E3Q9Y5X4 410 aa28.83■■■□□ 2.21
UPF3A-209ENST00000492270 ERICH2A1L162 156 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 RARBP10826 455 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 ACVR2BQ13705 512 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 WTAPQ15007 396 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 SLC30A10Q6XR72 485 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 ARRDC4Q8NCT1 418 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 XPNPEP3Q9NQH7 507 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 MAD2L2Q9UI95 211 aa28.82■■■□□ 2.2
UPF3A-209ENST00000492270 ADCY6O43306 1168 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 DHX16O60231 1041 aaKnown RBP28.81■■■□□ 2.2
UPF3A-209ENST00000492270 BAATQ14032 418 aaPredicted RBP28.81■■■□□ 2.2
UPF3A-209ENST00000492270 LRRC41Q15345 812 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 LRRC26Q2I0M4 334 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 TMEM67Q5HYA8 995 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 KATNBL1Q9H079 304 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 JMJD4Q9H9V9 463 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 VAT1LQ9HCJ6 419 aa28.81■■■□□ 2.2
UPF3A-209ENST00000492270 GPHNQ9NQX3 736 aaPredicted RBP28.81■■■□□ 2.2
UPF3A-209ENST00000492270 PTPDC1A2A3K4 754 aa28.8■■■□□ 2.2
UPF3A-209ENST00000492270 PGK1P00558 417 aa28.8■■■□□ 2.2
UPF3A-209ENST00000492270 SART3Q15020 963 aaKnown RBP28.8■■■□□ 2.2
UPF3A-209ENST00000492270 QRICH1Q2TAL8 776 aa28.8■■■□□ 2.2
UPF3A-209ENST00000492270 IGDCC4Q8TDY8 1250 aa28.8■■■□□ 2.2
UPF3A-209ENST00000492270 ABHD16BQ9H3Z7 469 aa28.8■■■□□ 2.2
UPF3A-209ENST00000492270 KBTBD13C9JR72 458 aa28.79■■■□□ 2.2
UPF3A-209ENST00000492270 CASC1Q6TDU7 716 aa28.79■■■□□ 2.2
UPF3A-209ENST00000492270 PNMA2Q9UL42 364 aa28.79■■■□□ 2.2
UPF3A-209ENST00000492270 FAM184BQ9ULE4 1060 aa28.79■■■□□ 2.2
UPF3A-209ENST00000492270 PALM3A6NDB9 673 aaPredicted RBP28.78■■■□□ 2.2
UPF3A-209ENST00000492270 KLRF2D3W0D1 207 aa28.78■■■□□ 2.2
UPF3A-209ENST00000492270 PRC1O43663 620 aa28.78■■■□□ 2.2
UPF3A-209ENST00000492270 ATN1P54259 1190 aaPredicted RBP28.78■■■□□ 2.2
UPF3A-209ENST00000492270 GRM4Q14833 912 aa28.78■■■□□ 2.2
UPF3A-209ENST00000492270 SLC35G1Q2M3R5 365 aa28.78■■■□□ 2.2
UPF3A-209ENST00000492270 CCDC144BQ3MJ40 725 aa28.78■■■□□ 2.2
UPF3A-209ENST00000492270 PCDH10Q9P2E7 1040 aa28.78■■■□□ 2.2
UPF3A-209ENST00000492270 COLQQ9Y215 455 aaPredicted RBP28.78■■■□□ 2.2
UPF3A-209ENST00000492270 SYNRGQ9UMZ2 1314 aa28.77■■■□□ 2.2
UPF3A-209ENST00000492270 ASB14A6NK59 587 aa28.77■■■□□ 2.2
UPF3A-209ENST00000492270 CALML3P27482 149 aa28.77■■■□□ 2.2
UPF3A-209ENST00000492270 TROAPQ12815 778 aa28.77■■■□□ 2.2
UPF3A-209ENST00000492270 RNF207Q6ZRF8 634 aa28.77■■■□□ 2.2
UPF3A-209ENST00000492270 LY9Q9HBG7 655 aa28.77■■■□□ 2.2
UPF3A-209ENST00000492270 ADAMTS4O75173 837 aa28.76■■■□□ 2.19
UPF3A-209ENST00000492270 CHRDL2Q6WN34 429 aa28.76■■■□□ 2.19
UPF3A-209ENST00000492270 ZMYND8Q9ULU4 1186 aaPredicted RBP28.76■■■□□ 2.19
UPF3A-209ENST00000492270 ADCYAP1R1P41586 468 aa28.75■■■□□ 2.19
UPF3A-209ENST00000492270 ALDH5A1P51649 535 aaPredicted RBP28.75■■■□□ 2.19
UPF3A-209ENST00000492270 RPS6P62753 249 aaKnown RBP28.75■■■□□ 2.19
UPF3A-209ENST00000492270 IRX5P78411 483 aaPredicted RBP28.75■■■□□ 2.19
UPF3A-209ENST00000492270 EEPD1Q7L9B9 569 aa28.75■■■□□ 2.19
UPF3A-209ENST00000492270 FBXO16Q8IX29 292 aaPredicted RBP28.75■■■□□ 2.19
UPF3A-209ENST00000492270 FERMT2Q96AC1 680 aa28.75■■■□□ 2.19
UPF3A-209ENST00000492270 ABCB11O95342 1321 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.74■■■□□ 2.19
UPF3A-209ENST00000492270 SH2B2O14492 632 aaPredicted RBP28.74■■■□□ 2.19
UPF3A-209ENST00000492270 SYN1P17600 705 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 MCM5P33992 734 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 RNF180Q86T96 592 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 FBXO11Q86XK2 927 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 TBC1D5Q92609 795 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 MYL10Q9BUA6 226 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 PPP4R2Q9NY27 417 aa28.74■■■□□ 2.19
UPF3A-209ENST00000492270 MYADML2A6NDP7 307 aa28.73■■■□□ 2.19
UPF3A-209ENST00000492270 PPP1R11O60927 126 aaPredicted RBP28.73■■■□□ 2.19
UPF3A-209ENST00000492270 DUSP11O75319 330 aaKnown RBP28.73■■■□□ 2.19
UPF3A-209ENST00000492270 CATIPQ7Z7H3 387 aa28.73■■■□□ 2.19
UPF3A-209ENST00000492270 MORC4Q8TE76 937 aa28.73■■■□□ 2.19
UPF3A-209ENST00000492270 MTMR8Q96EF0 704 aa28.73■■■□□ 2.19
UPF3A-209ENST00000492270 LRRC2Q9BYS8 371 aa28.73■■■□□ 2.19
UPF3A-209ENST00000492270 PDGFCQ9NRA1 345 aa28.73■■■□□ 2.19
UPF3A-209ENST00000492270 ADD3Q9UEY8 706 aaKnown RBP28.73■■■□□ 2.19
UPF3A-209ENST00000492270 CENPBP07199 599 aaPredicted RBP28.72■■■□□ 2.19
UPF3A-209ENST00000492270 PTGS1P23219 599 aa28.72■■■□□ 2.19
UPF3A-209ENST00000492270 RASEFQ8IZ41 740 aa28.72■■■□□ 2.19
UPF3A-209ENST00000492270 ZNF654Q8IZM8 581 aa28.72■■■□□ 2.19
UPF3A-209ENST00000492270 NUP133Q8WUM0 1156 aa28.72■■■□□ 2.19
UPF3A-209ENST00000492270 PHF24Q9UPV7 400 aa28.72■■■□□ 2.19
UPF3A-209ENST00000492270 LTBP2Q14767 1821 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 KIAA1217Q5T5P2 1943 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 CYTH3O43739 400 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 RTP1P59025 263 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 HABP4Q5JVS0 413 aaKnown RBP28.71■■■□□ 2.19
UPF3A-209ENST00000492270 RNF20Q5VTR2 975 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 TAPT1Q6NXT6 567 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 SLC39A5Q6ZMH5 540 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 HOMER1Q86YM7 354 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 PIGSQ96S52 555 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 MTA3Q9BTC8 594 aa28.71■■■□□ 2.19
UPF3A-209ENST00000492270 ZBTB5O15062 677 aa28.7■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms