RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	IFT88	Q13099	833 aa		13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	PTPA	Q15257	358 aa		13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	KRT26	Q7Z3Y9	468 aa		13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	TMEM139	Q8IV31	216 aa		13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	TEX11	Q8IYF3	940 aa		13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	EXOC1	Q9NV70	894 aa		13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	BIN2	Q9UBW5	565 aa	Predicted RBP	13.73	□□□□□ -0.21
SHROOM3-208	ENST00000486758	CACNA1F	O60840	1977 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	NOP2	P46087	812 aa	Known RBP	13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	EHBP1	Q8NDI1	1231 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	EHD2	Q9NZN4	543 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	TTC26	A0AVF1	554 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	SCG2	P13521	617 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	ERCC5	P28715	1186 aa	Predicted RBP	13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	ERVK-24	P63145	666 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	ACTN3	Q08043	901 aa	Predicted RBP	13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	C3orf67	Q6ZVT6	689 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	NOC4L	Q9BVI4	516 aa	Known RBP	13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	DUSP10	Q9Y6W6	482 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	TUBB	P07437	444 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	SLC20A2	Q08357	652 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	PDE4D	Q08499	809 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	CUL4B	Q13620	913 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	MCTP2	Q6DN12	878 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	AGXT2	Q9BYV1	514 aa		13.72	□□□□□ -0.21
SHROOM3-208	ENST00000486758	MST1R	Q04912	1400 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	TEC	P42680	631 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	CORO7	P57737	925 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	GPR162	Q16538	588 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	EARS2	Q5JPH6	523 aa	Known RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	BANK1	Q8NDB2	785 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	FOXP1	Q9H334	677 aa	Predicted RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	HAUS4	Q9H6D7	363 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	NLRC4	Q9NPP4	1024 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	LRWD1	Q9UFC0	647 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	MINPP1	Q9UNW1	487 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	SALL1	Q9NSC2	1324 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	RFX7	Q2KHR2	1363 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758		A0A1B0GTH6	734 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	RPSA	P08865	295 aa	Known RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	TOB1	P50616	345 aa	Predicted RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	LRRC47	Q8N1G4	583 aa	Known RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	IFIH1	Q9BYX4	1025 aa	Known RBP	13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	HPSE	Q9Y251	543 aa		13.71	□□□□□ -0.21
SHROOM3-208	ENST00000486758	MYO1F	O00160	1098 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	MYCN	P04198	464 aa	Predicted RBP	13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CALM1	P0DP23	149 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CALM2	P0DP24	149 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CALM3	P0DP25	149 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	IFFO1	Q0D2I5	559 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	EZH2	Q15910	746 aa	Known RBP	13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TBC1D9B	Q66K14	1250 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	USP17L2	Q6R6M4	530 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	MICALCL	Q6ZW33	695 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TAF4B	Q92750	862 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	RRP36	Q96EU6	259 aa	Known RBP	13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CCDC43	Q96MW1	224 aa	Known RBP	13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TRIM31	Q9BZY9	425 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	NALCN	Q8IZF0	1738 aa		13.71	□□□□□ -0.22
SHROOM3-208	ENST00000486758	MAP2K7	O14733	419 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	MOCS3	O95396	460 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	VEGFA	P15692	232 aa	Predicted RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	YY1	P25490	414 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	GBP2	P32456	591 aa	Predicted RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	PRPF4B	Q13523	1007 aa	Known RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	FAM196A	Q6ZSG2	479 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	CCDC121	Q6ZUS5	278 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	STAG2	Q8N3U4	1231 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	COG1	Q8WTW3	980 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	MED15	Q96RN5	788 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	PSD3	Q9NYI0	1048 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ADD3	Q9UEY8	706 aa	Known RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	FBXO2	Q9UK22	296 aa	Predicted RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	OVOS2	A0A0G2JMS6	1433 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TLDC2	A0PJX2	215 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	NCK2	O43639	380 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	PARP1	P09874	1014 aa	Known RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	USP14	P54578	494 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	GUCY2D	Q02846	1103 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	PPFIA1	Q13136	1202 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	NAA25	Q14CX7	972 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	EP400NL	Q6ZTU2	488 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	RASGRP2	Q7LDG7	609 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TRIML1	Q8N9V2	468 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	RBM28	Q9NW13	759 aa	Known RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	GUCY2C	P25092	1073 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TUBB4B	P68371	445 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TCP10	Q12799	353 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TUBB2A	Q13885	445 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TCERG1L	Q5VWI1	586 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	TUBB2B	Q9BVA1	445 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	RNF26	Q9BY78	433 aa	Predicted RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	HPCAL4	Q9UM19	191 aa		13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	SRPRB	Q9Y5M8	271 aa	Known RBP	13.7	□□□□□ -0.22
SHROOM3-208	ENST00000486758	KRT14	P02533	472 aa		13.69	□□□□□ -0.22
SHROOM3-208	ENST00000486758	NTRK3	Q16288	839 aa		13.69	□□□□□ -0.22
SHROOM3-208	ENST00000486758	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms