RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 MKNK2Q9HBH9 465 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 ARHGEF10LQ9HCE6 1279 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 RIPK3Q9Y572 518 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 CDH23Q9H251 3354 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 F5H6K3 240 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 TTLL1O95922 423 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 APPP05067 770 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 SNAP25P60880 206 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 TFAP4Q01664 338 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 KLRC3Q07444 240 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 SEC23AQ15436 765 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 TTBK2Q6IQ55 1244 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 BTNL9Q6UXG8 535 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 ZNF444Q8N0Y2 327 aaPredicted RBP6.77□□□□□ -1.33
CUX1-208ENST00000485792 GPRC5AQ8NFJ5 357 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 NPLOC4Q8TAT6 608 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 SMCR8Q8TEV9 937 aaPredicted RBP6.77□□□□□ -1.33
CUX1-208ENST00000485792 SPIRE2Q8WWL2 714 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 ZKSCAN3Q9BRR0 538 aa6.77□□□□□ -1.33
CUX1-208ENST00000485792 KAT6AQ92794 2004 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 B4E1Z4 1266 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 VWA5AO00534 786 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 MPHOSPH10O00566 681 aaKnown RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 OPLAHO14841 1288 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 PPP1R11O60927 126 aaPredicted RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 COBLO75128 1261 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 KDM4AO75164 1064 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 SLC3A2P08195 630 aaKnown RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 CAPN2P17655 700 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 HOXD10P28358 340 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 MAPK4P31152 587 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 FLT3LGP49771 235 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 FCGRTP55899 365 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 USP46P62068 366 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 IRX3P78415 501 aaPredicted RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 GRB14Q14449 540 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 KIF22Q14807 665 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 NECTIN1Q15223 517 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 ADCK5Q3MIX3 580 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 TSGA10IPQ3SY00 556 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 KMT5BQ4FZB7 885 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 MAP3K21Q5TCX8 1036 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 NBPF11Q86T75 865 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 DGKHQ86XP1 1220 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 MB21D2Q8IYB1 491 aaPredicted RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 ABRAQ8N0Z2 381 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 KCNB2Q92953 911 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 PURBQ96QR8 312 aaKnown RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 ESYT1Q9BSJ8 1104 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 PRR14Q9BWN1 585 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 MOV10L1Q9BXT6 1211 aaKnown RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 DIAPH3Q9NSV4 1193 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 CLIP2Q9UDT6 1046 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 PPP1R9AQ9ULJ8 1098 aa6.76□□□□□ -1.33
CUX1-208ENST00000485792 TRIP12Q14669 1992 aaPredicted RBP6.76□□□□□ -1.33
CUX1-208ENST00000485792 SLC15A5A6NIM6 579 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 ZNF213O14771 459 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 ADAMTS3O15072 1205 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 ACTN4O43707 911 aaKnown RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 STRNO43815 780 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 MYCP01106 439 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 TSPY3P0CV98 308 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 TSPY8P0CW00 308 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 FDX1P10109 184 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 PDHBP11177 359 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 EN2P19622 333 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 GRK4P32298 578 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 TMEM63BQ5T3F8 832 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 MYSM1Q5VVJ2 828 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 MFSD6Q6ZSS7 791 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 GPR142Q7Z601 462 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 RIOX2Q8IUF8 465 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 ENAHQ8N8S7 591 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 PRPF38AQ8NAV1 312 aaKnown RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 DIS3LQ8TF46 1054 aaKnown RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 RUFY2Q8WXA3 655 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 LENG1Q96BZ8 264 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 FEZ1Q99689 392 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 TMEM47Q9BQJ4 181 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 MTA3Q9BTC8 594 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 PAGR1Q9BTK6 254 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 KATNBL1Q9H079 304 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 SPATC1LQ9H0A9 340 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 UNC93B1Q9H1C4 597 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 RNF41Q9H4P4 317 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 SLC38A10Q9HBR0 1119 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 GOPCQ9HD26 462 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 PAK6Q9NQU5 681 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 ZSWIM5Q9P217 1185 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 CTNNA3Q9UI47 895 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 RBM8AQ9Y5S9 174 aaKnown RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 SIP14410 1827 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 SCN10AQ9Y5Y9 1956 aa6.75□□□□□ -1.33
CUX1-208ENST00000485792 FRMPD2Q68DX3 1309 aaPredicted RBP6.75□□□□□ -1.33
CUX1-208ENST00000485792 DNAJC25-GNG10A0A024R161 153 aa6.74□□□□□ -1.33
CUX1-208ENST00000485792 TNPO2O14787 897 aaKnown RBP6.74□□□□□ -1.33
CUX1-208ENST00000485792 HOXA2O43364 376 aa6.74□□□□□ -1.33
CUX1-208ENST00000485792 CYTH3O43739 400 aa6.74□□□□□ -1.33
CUX1-208ENST00000485792 DTNBO60941 627 aa6.74□□□□□ -1.33
CUX1-208ENST00000485792 FLOT1O75955 427 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms