RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 SAP30BPQ9UHR5 308 aaKnown RBP7.39□□□□□ -1.23
PTCD3-215ENST00000484203 HTTP42858 3142 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 ECM29Q5VYK3 1845 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 TCRBV5S4A2TA0A5A2 114 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 FIGNL2A6NMB9 653 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 SOBPA7XYQ1 873 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L15C9J2P7 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L13C9JLJ4 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L11C9JVI0 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L18D6R9N7 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L22D6RA61 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L17D6RBQ6 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L19D6RCP7 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L20D6RJB6 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 TERTO14746 1132 aaKnown RBP7.38□□□□□ -1.23
PTCD3-215ENST00000484203 STAU1O95793 577 aaKnown RBP7.38□□□□□ -1.23
PTCD3-215ENST00000484203 GJB1P08034 283 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 RRP1P56182 461 aaKnown RBP7.38□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L24Q0WX57 530 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 RAB3GAP1Q15042 981 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 TREML2Q5T2D2 321 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 C20orf194Q5TEA3 1177 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 TMEM179Q6ZVK1 233 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 TRIM50Q86XT4 487 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 ANKRD13CQ8N6S4 541 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 KBTBD3Q8NAB2 608 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 LPAR1Q92633 364 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 ARHGAP39Q9C0H5 1083 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 DNAJC18Q9H819 358 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 DCP1AQ9NPI6 582 aaPredicted RBP7.38□□□□□ -1.23
PTCD3-215ENST00000484203 HOXC10Q9NYD6 342 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 RABGAP1Q9Y3P9 1069 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 PCDHGA11Q9Y5H2 935 aa7.38□□□□□ -1.23
PTCD3-215ENST00000484203 ADCY3O60266 1144 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 MBD4O95243 580 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 GDF11O95390 407 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 XRCC5P13010 732 aaKnown RBP7.37□□□□□ -1.23
PTCD3-215ENST00000484203 FLT3LGP49771 235 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 ATP1A2P50993 1020 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 HERVK_113P62684 666 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 PRKCZQ05513 592 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 GABPAQ06546 454 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 CLN3Q13286 438 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 LBX2Q6XYB7 198 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 MB21D1Q8N884 522 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 NACAP1Q9BZK3 213 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 RNF208Q9H0X6 261 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 BCL11AQ9H165 835 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 KANSL2Q9H9L4 492 aa7.37□□□□□ -1.23
PTCD3-215ENST00000484203 CWC22Q9HCG8 908 aaKnown RBP7.37□□□□□ -1.23
PTCD3-215ENST00000484203 ARPP21Q9UBL0 812 aaPredicted RBP7.37□□□□□ -1.23
PTCD3-215ENST00000484203 MPHOSPH10O00566 681 aaKnown RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 RNF113AO15541 343 aaKnown RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 IL2RAP01589 272 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 HMGCRP04035 888 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SLC3A2P08195 630 aaKnown RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SHMT1P34896 483 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 GJA8P48165 433 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 PLCD1P51178 756 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 GDF10P55107 478 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 HDAC1Q13547 482 aaPredicted RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 RRP1BQ14684 758 aaKnown RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SBK1Q52WX2 424 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 C12orf60Q5U649 245 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 CCDC84Q86UT8 332 aaPredicted RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 LCORLQ8N3X6 602 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 CCDC82Q8N4S0 544 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SH3TC2Q8TF17 1288 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 APPBP2Q92624 585 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 P2RX7Q99572 595 aaKnown RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 ESYT1Q9BSJ8 1104 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 HTATIP2Q9BUP3 242 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 VRTNQ9H8Y1 702 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 ARMT1Q9H993 441 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 ETNK1Q9HBU6 452 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SLC5A4Q9NY91 659 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 DNMT3LQ9UJW3 386 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SYNPO2Q9UMS6 1093 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 SLC4A4Q9Y6R1 1079 aa7.36□□□□□ -1.23
PTCD3-215ENST00000484203 KIAA0100Q14667 2235 aaKnown RBP7.36□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L12C9JPN9 530 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 USP17L21D6R901 530 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 WIPF1O43516 503 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 STRNO43815 780 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 SLURP2P0DP57 97 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 CCL5P13501 91 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 VCAM1P19320 739 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 EN2P19622 333 aaPredicted RBP7.35□□□□□ -1.23
PTCD3-215ENST00000484203 MX1P20591 662 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 RASA1P20936 1047 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 COPB2P35606 906 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 RGS2P41220 211 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 RNF144AP50876 292 aaPredicted RBP7.35□□□□□ -1.23
PTCD3-215ENST00000484203 ERVK-24P63145 666 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 INSM1Q01101 510 aaPredicted RBP7.35□□□□□ -1.23
PTCD3-215ENST00000484203 COG2Q14746 738 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 FOXD4L5Q5VV16 416 aaPredicted RBP7.35□□□□□ -1.23
PTCD3-215ENST00000484203 CATSPERGQ6ZRH7 1159 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 C16orf86Q6ZW13 317 aa7.35□□□□□ -1.23
PTCD3-215ENST00000484203 RNF217Q8TC41 542 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms