RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 SNAI1O95863 264 aaPredicted RBP13.4□□□□□ -0.26
CCM2-213ENST00000480658 ADCYAP1R1P41586 468 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 GJA9P57773 515 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 NKX3-2P78367 333 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 CCDC144BQ3MJ40 725 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 BRDTQ58F21 947 aaPredicted RBP13.4□□□□□ -0.26
CCM2-213ENST00000480658 RGS22Q8NE09 1264 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 DNERQ8NFT8 737 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 UPF3AQ9H1J1 476 aaKnown RBP13.4□□□□□ -0.26
CCM2-213ENST00000480658 MTMR7Q9Y216 660 aa13.4□□□□□ -0.26
CCM2-213ENST00000480658 ZNFX1Q9P2E3 1918 aaKnown RBP13.4□□□□□ -0.26
CCM2-213ENST00000480658 DCDC2CA8MYV0 355 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 PARP1P09874 1014 aaKnown RBP13.39□□□□□ -0.27
CCM2-213ENST00000480658 C6orf222P0C671 652 aaPredicted RBP13.39□□□□□ -0.27
CCM2-213ENST00000480658 SYN1P17600 705 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 ACLYP53396 1101 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 TNFAIP2Q03169 654 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 IFIT1BQ5T764 474 aaKnown RBP13.39□□□□□ -0.27
CCM2-213ENST00000480658 ANO1Q5XXA6 986 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 IQSEC1Q6DN90 963 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 NSMFQ6X4W1 530 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 ANKRD33Q7Z3H0 272 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 RALYLQ86SE5 291 aaKnown RBP13.39□□□□□ -0.27
CCM2-213ENST00000480658 MCF2L2Q86YR7 1114 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 AP5M1Q9H0R1 490 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 INCENPQ9NQS7 918 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 TNKSO95271 1327 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 ABCB11O95342 1321 aa13.39□□□□□ -0.27
CCM2-213ENST00000480658 FRMPD2Q68DX3 1309 aaPredicted RBP13.39□□□□□ -0.27
CCM2-213ENST00000480658 CEP290O15078 2479 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 A0A0U1RQG5 324 aaPredicted RBP13.38□□□□□ -0.27
CCM2-213ENST00000480658 PTPDC1A2A3K4 754 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 NKRFO15226 690 aaKnown RBP eCLIP13.38□□□□□ -0.27
CCM2-213ENST00000480658 TLR3O15455 904 aaKnown RBP13.38□□□□□ -0.27
CCM2-213ENST00000480658 PGK1P00558 417 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 CLTBP09497 229 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 RNF207Q6ZRF8 634 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 KIAA1211Q6ZU35 1233 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 SAMD3Q8N6K7 520 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 KLHDC9Q8NEP7 349 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 MORC4Q8TE76 937 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 GPCPD1Q9NPB8 672 aa13.38□□□□□ -0.27
CCM2-213ENST00000480658 PRDM5Q9NQX1 630 aaPredicted RBP13.38□□□□□ -0.27
CCM2-213ENST00000480658 MAP3K20Q9NYL2 800 aaKnown RBP13.38□□□□□ -0.27
CCM2-213ENST00000480658 B4E1Z4 1266 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 GSPT1P15170 499 aaKnown RBP13.37□□□□□ -0.27
CCM2-213ENST00000480658 TAL1P17542 331 aaPredicted RBP13.37□□□□□ -0.27
CCM2-213ENST00000480658 SLC16A2P36021 539 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 TRIM60Q495X7 471 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 GNASQ5JWF2 1037 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 CASC1Q6TDU7 716 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 NOL8Q76FK4 1167 aaKnown RBP13.37□□□□□ -0.27
CCM2-213ENST00000480658 TLK2Q86UE8 772 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 ENAHQ8N8S7 591 aaPredicted RBP13.37□□□□□ -0.27
CCM2-213ENST00000480658 MTA3Q9BTC8 594 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 ZSWIM5Q9P217 1185 aa13.37□□□□□ -0.27
CCM2-213ENST00000480658 DHX16O60231 1041 aaKnown RBP13.36□□□□□ -0.27
CCM2-213ENST00000480658 CHMLP26374 656 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 CPT1AP50416 773 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 ALDH5A1P51649 535 aaPredicted RBP13.36□□□□□ -0.27
CCM2-213ENST00000480658 CNTN2Q02246 1040 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 KCNA10Q16322 511 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 NCOA7Q8NI08 942 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 FERMT2Q96AC1 680 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 FGD4Q96M96 766 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 KATNBL1Q9H079 304 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 PDLIM7Q9NR12 457 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 MRPL11Q9Y3B7 192 aaKnown RBP13.36□□□□□ -0.27
CCM2-213ENST00000480658 LRRC37A2A6NM11 1700 aa13.36□□□□□ -0.27
CCM2-213ENST00000480658 SOWAHBA6NEL2 793 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 KIAA0355O15063 1070 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 SGSM2O43147 1006 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 PQBP1O60828 265 aaKnown RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 ASGR1P07306 291 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 RAG1P15918 1043 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 PDE4AP27815 886 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 MDM2Q00987 491 aaPredicted RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 PDE4DQ08499 809 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 CDC37Q16543 378 aaPredicted RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 FSCN1Q16658 493 aaKnown RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 MUM1L1Q5H9M0 696 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 CCSAPQ6IQ19 270 aaPredicted RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 TTBK2Q6IQ55 1244 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 CENPQQ7L2Z9 268 aaPredicted RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 SCFD2Q8WU76 684 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 VTI1AQ96AJ9 217 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 ZKSCAN3Q9BRR0 538 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 POLR3EQ9NVU0 708 aa13.35□□□□□ -0.27
CCM2-213ENST00000480658 RANBP2P49792 3224 aaKnown RBP13.35□□□□□ -0.27
CCM2-213ENST00000480658 LTBP2Q14767 1821 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 KPNA6O60684 536 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 CALML3P27482 149 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 RPS6P62753 249 aaKnown RBP13.34□□□□□ -0.27
CCM2-213ENST00000480658 TLE2Q04725 743 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 BAATQ14032 418 aaPredicted RBP13.34□□□□□ -0.27
CCM2-213ENST00000480658 PPP2R5BQ15173 497 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 DUSP28Q4G0W2 176 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 TMTC2Q8N394 836 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 NSUN6Q8TEA1 469 aaKnown RBP13.34□□□□□ -0.27
CCM2-213ENST00000480658 IWS1Q96ST2 819 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms