RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	MED4	Q9NPJ6	270 aa		5.57	□□□□□ -1.52
PTCD3-212	ENST00000477520	MET	P08581	1390 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	ABCC11	Q96J66	1382 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520		A0A1B0GUL7	405 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	NEMF	O60524	1076 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	CLSTN1	O94985	981 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	TPM1	P09493	284 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	HOXA5	P20719	270 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	U2AF2	P26368	475 aa	Known RBP eCLIP	5.56	□□□□□ -1.52	3e-15	■□□□□ 9.3
PTCD3-212	ENST00000477520	CASQ1	P31415	396 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	GDNF	P39905	211 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	SSR1	P43307	286 aa	Known RBP	5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	NOP2	P46087	812 aa	Known RBP	5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	CLCN7	P51798	805 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	TMEM132E	Q6IEE7	984 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	DHX37	Q8IY37	1157 aa	Known RBP	5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	NOL10	Q9BSC4	688 aa	Known RBP	5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	POLR3GL	Q9BT43	218 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	FAM107B	Q9H098	131 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	ATP13A1	Q9HD20	1204 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	SEMA3G	Q9NS98	782 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	PSD3	Q9NYI0	1048 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	DONSON	Q9NYP3	566 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	STK26	Q9P289	416 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	TRAK1	Q9UPV9	953 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	YTHDC2	Q9H6S0	1430 aa	Known RBP	5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	NRXN3	Q9Y4C0	1643 aa		5.56	□□□□□ -1.52
PTCD3-212	ENST00000477520	CHD2	O14647	1828 aa	Known RBP	5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC196	A0A1B0GTZ2	297 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	RBAK-RBAKDN	I3L0D1	243 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	CPNE3	O75131	537 aa	Known RBP	5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	IVL	P07476	585 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	TMEM253	P0C7T8	217 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	CAPN2	P17655	700 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	USP8	P40818	1118 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	BMP2KL	Q5H9B9	411 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	PPM1J	Q5JR12	505 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	MPRIP	Q6WCQ1	1025 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	C14orf37	Q86TY3	774 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	TICAM2	Q86XR7	235 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	SUGP1	Q8IWZ8	645 aa	Known RBP	5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	IQUB	Q8NA54	791 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC112	Q8NEF3	446 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	GPBAR1	Q8TDU6	330 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC74A	Q96AQ1	378 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	KIF1BP	Q96EK5	621 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	CSAD	Q9Y600	493 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	TECPR2	O15040	1411 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	FAM135B	Q49AJ0	1406 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	ADGRB1	O14514	1584 aa		5.55	□□□□□ -1.52
PTCD3-212	ENST00000477520	SETD1A	O15047	1707 aa	Known RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	DLC1	Q96QB1	1528 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	CNTNAP4	Q9C0A0	1308 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	PRR33	A8MZF0	331 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	ETV2	O00321	342 aa	Predicted RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	DHX16	O60231	1041 aa	Known RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	MED14OS	P0DP75	135 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	GRM2	Q14416	872 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	SKAP1	Q86WV1	359 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	WDR63	Q8IWG1	891 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	SULF2	Q8IWU5	870 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	ERO1A	Q96HE7	468 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	HSPA12B	Q96MM6	686 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	CEP89	Q96ST8	783 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	UTP14A	Q9BVJ6	771 aa	Known RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	ARGLU1	Q9NWB6	273 aa	Predicted RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	RSPH14	Q9UHP6	348 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	GPN3	Q9UHW5	284 aa	Predicted RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	PTCH1	Q13635	1447 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	KNDC1	Q76NI1	1749 aa		5.54	□□□□□ -1.52
PTCD3-212	ENST00000477520	CPS1	P31327	1500 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	ELP1	O95163	1332 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC171	Q6TFL3	1326 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	GNAT3	A8MTJ3	354 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	GADD45B	O75293	160 aa	Predicted RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	CAVIN2	O95810	425 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	HNRNPH2	P55795	449 aa	Known RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	TMF1	P82094	1093 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	NCBP1	Q09161	790 aa	Known RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	RAD51AP2	Q09MP3	1159 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	CCDC27	Q2M243	656 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	MAP1S	Q66K74	1059 aa	Predicted RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	CIAPIN1	Q6FI81	312 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	GOLGA5	Q8TBA6	731 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	PRAM1	Q96QH2	718 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	PLCD4	Q9BRC7	762 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	DCP1A	Q9NPI6	582 aa	Predicted RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	TMEM39A	Q9NV64	488 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	DDX19B	Q9UMR2	479 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	SMG5	Q9UPR3	1016 aa	Known RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	PTPRU	Q92729	1446 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	NWD1	Q149M9	1564 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	XRN1	Q8IZH2	1706 aa	Known RBP	5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	ASXL1	Q8IXJ9	1541 aa		5.53	□□□□□ -1.52
PTCD3-212	ENST00000477520	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	5.52	□□□□□ -1.53
PTCD3-212	ENST00000477520	ST20-MTHFS	A0A0A6YYL1	179 aa		5.52	□□□□□ -1.53
PTCD3-212	ENST00000477520	CARNS1	A5YM72	827 aa		5.52	□□□□□ -1.53
PTCD3-212	ENST00000477520	TCAF2	A6NFQ2	919 aa		5.52	□□□□□ -1.53

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