RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 PGK2P07205 417 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 CCL5P13501 91 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 COL9A3Q14050 684 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-211ENST00000472490 CCL14Q16627 93 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 ZNF792Q3KQV3 632 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 Q6ZUG5 572 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 ZNF467Q7Z7K2 595 aaPredicted RBP16.49■□□□□ 0.23
BRCA1-211ENST00000472490 MAML3Q96JK9 1138 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 SPZ1Q9BXG8 430 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 MRPL11Q9Y3B7 192 aaKnown RBP16.49■□□□□ 0.23
BRCA1-211ENST00000472490 KLF18A0A0U1RQI7 1052 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 POTEB2H3BUK9 544 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 GJB1P08034 283 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 PRKAR2AP13861 404 aaKnown RBP16.48■□□□□ 0.23
BRCA1-211ENST00000472490 QRICH1Q2TAL8 776 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 USH1GQ495M9 461 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 MAP3K21Q5TCX8 1036 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 HOMER1Q86YM7 354 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 MCF2L2Q86YR7 1114 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 RGS22Q8NE09 1264 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 MTMR8Q96EF0 704 aa16.48■□□□□ 0.23
BRCA1-211ENST00000472490 RRP36Q96EU6 259 aaKnown RBP16.48■□□□□ 0.23
BRCA1-211ENST00000472490 A1CFQ9NQ94 594 aaKnown RBP16.48■□□□□ 0.23
BRCA1-211ENST00000472490 SEC63Q9UGP8 760 aaKnown RBP16.48■□□□□ 0.23
BRCA1-211ENST00000472490 NAP1L2Q9ULW6 460 aaPredicted RBP16.48■□□□□ 0.23
BRCA1-211ENST00000472490 ZNF236Q9UL36 1845 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 PNMA6FA0A0J9YX94 578 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 CPA1P15085 419 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 CACNB2Q08289 660 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-211ENST00000472490 MTFR1Q15390 333 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 C8orf34Q49A92 452 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 MUM1L1Q5H9M0 696 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 NSMFQ6X4W1 530 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 BRF1Q92994 677 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 MPHOSPH6Q99547 160 aaKnown RBP16.47■□□□□ 0.23
BRCA1-211ENST00000472490 AGXT2Q9BYV1 514 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 UPF2Q9HAU5 1272 aaKnown RBP16.47■□□□□ 0.23
BRCA1-211ENST00000472490 CYP39A1Q9NYL5 469 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 FLRT1Q9NZU1 646 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 ADD3Q9UEY8 706 aaKnown RBP16.47■□□□□ 0.23
BRCA1-211ENST00000472490 NRBP1Q9UHY1 535 aa16.47■□□□□ 0.23
BRCA1-211ENST00000472490 PTPDC1A2A3K4 754 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 MSCO60682 206 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 RXRAP19793 462 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 SOX10P56693 466 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 RTN1Q16799 776 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 MAMDC4Q6UXC1 1216 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 RNF207Q6ZRF8 634 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 CCDC144CPQ8IYA2 1237 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 SAMD3Q8N6K7 520 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 CLEC4DQ8WXI8 215 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 TINF2Q9BSI4 451 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.46■□□□□ 0.23
BRCA1-211ENST00000472490 UNC93B1Q9H1C4 597 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 PAK6Q9NQU5 681 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-211ENST00000472490 PDRG1Q9NUG6 133 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 BRPF3Q9ULD4 1205 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 CNPY2Q9Y2B0 182 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 PCDHA1Q9Y5I3 950 aa16.46■□□□□ 0.23
BRCA1-211ENST00000472490 SYNGAP1Q96PV0 1343 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 LOC102724159A0A0B4J2E5 919 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 ASB14A6NK59 587 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 GOLGA8AA7E2F4 631 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 GOLGA8BA8MQT2 603 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 NFIBO00712 420 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 CYTH3O43739 400 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 CYP2C19P33261 490 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 GJA8P48165 433 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 METAP2P50579 478 aaKnown RBP eCLIP16.45■□□□□ 0.22
BRCA1-211ENST00000472490 TRIM32Q13049 653 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 PWP2Q15269 919 aaKnown RBP16.45■□□□□ 0.22
BRCA1-211ENST00000472490 ANKRD1Q15327 319 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 TMTC3Q6ZXV5 915 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 FAM133AQ8N9E0 248 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 PIGSQ96S52 555 aa16.45■□□□□ 0.22
BRCA1-211ENST00000472490 UPF3BQ9BZI7 483 aaKnown RBP16.45■□□□□ 0.22
BRCA1-211ENST00000472490 MAP3K20Q9NYL2 800 aaKnown RBP16.45■□□□□ 0.22
BRCA1-211ENST00000472490 B4DLN1 442 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 SGPL1O95470 568 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 SEC24BO95487 1268 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 IGHA2P01877 340 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 CNGA1P29973 690 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 MRPL12P52815 198 aaKnown RBP16.44■□□□□ 0.22
BRCA1-211ENST00000472490 EVCP57679 992 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 APOBRQ0VD83 1088 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 BAATQ14032 418 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-211ENST00000472490 SRBD1Q8N5C6 995 aaKnown RBP16.44■□□□□ 0.22
BRCA1-211ENST00000472490 U2AF1L4Q8WU68 220 aaKnown RBP16.44■□□□□ 0.22
BRCA1-211ENST00000472490 IL17RAQ96F46 866 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 DEFB118Q96PH6 123 aa16.44■□□□□ 0.22
BRCA1-211ENST00000472490 COL11A1P12107 1806 aaPredicted RBP16.44■□□□□ 0.22
BRCA1-211ENST00000472490 PLEKHA8P1O95397 391 aa16.43■□□□□ 0.22
BRCA1-211ENST00000472490 CALML3P27482 149 aa16.43■□□□□ 0.22
BRCA1-211ENST00000472490 RPS6P62753 249 aaKnown RBP16.43■□□□□ 0.22
BRCA1-211ENST00000472490 POTEHQ6S545 545 aa16.43■□□□□ 0.22
BRCA1-211ENST00000472490 RAB11FIP4Q86YS3 637 aa16.43■□□□□ 0.22
BRCA1-211ENST00000472490 DNERQ8NFT8 737 aa16.43■□□□□ 0.22
BRCA1-211ENST00000472490 PLXNB2O15031 1838 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 POTEFA5A3E0 1075 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 TFRCP02786 760 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms