RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SEPT2Q15019 361 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 KCNA10Q16322 511 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 TMEM31Q5JXX7 168 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 CCSAPQ6IQ19 270 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 TATDN1Q6P1N9 297 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 OTOP2Q7RTS6 562 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 NCAPG2Q86XI2 1143 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 SIAH1Q8IUQ4 282 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 KLHDC9Q8NEP7 349 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 GTF3C2Q8WUA4 911 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 ATG4CQ96DT6 458 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 SNX27Q96L92 541 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 MEIS3Q99687 375 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 SPATC1LQ9H0A9 340 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 DHX36Q9H2U1 1008 aaKnown RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 IL21Q9HBE4 155 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 PIH1D3Q9NQM4 214 aaKnown RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 LRP2BPQ9P2M1 347 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 ZNF318Q5VUA4 2279 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 NAV1Q8NEY1 1877 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 SYNRGQ9UMZ2 1314 aa6.49□□□□□ -1.37
PTPN4-209ENST00000469511 COL4A4P53420 1690 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-209ENST00000469511 DCDC2CA8MYV0 355 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 MAP4K4O95819 1239 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-209ENST00000469511 SNAI1O95863 264 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-209ENST00000469511 CYP2E1P05181 493 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-209ENST00000469511 UBTFL1P0CB47 393 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-209ENST00000469511 RARBP10826 455 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 ARID4AP29374 1257 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-209ENST00000469511 SHMT1P34896 483 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 MRE11P49959 708 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 COG2Q14746 738 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 TMEM132BQ14DG7 1078 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 NAA16Q6N069 864 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-209ENST00000469511 MIGA1Q8NAN2 632 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 PNMA1Q8ND90 353 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 HERVK_113Q902F9 699 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 TOX2Q96NM4 488 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 STARD7Q9NQZ5 370 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 PLSCR2Q9NRY7 297 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 HCN4Q9Y3Q4 1203 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 MTCH2Q9Y6C9 303 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 MYO7AQ13402 2215 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 XIRP2A4UGR9 3374 aa6.48□□□□□ -1.37
PTPN4-209ENST00000469511 ERC2O15083 957 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 CTAGE5O15320 804 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 STRNO43815 780 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 ZAP70P43403 619 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 CCL23P55773 120 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 PPIGQ13427 754 aaKnown RBP eCLIP6.47□□□□□ -1.372e-7■□□□□ 9.1
PTPN4-209ENST00000469511 MVPQ14764 893 aaKnown RBP6.47□□□□□ -1.37
PTPN4-209ENST00000469511 ABCB5Q2M3G0 1257 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 ZNF792Q3KQV3 632 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 CERKLQ49MI3 558 aaPredicted RBP6.47□□□□□ -1.37
PTPN4-209ENST00000469511 RNF180Q86T96 592 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 FAM126BQ8IXS8 530 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 SPICE1Q8N0Z3 855 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 SHCBP1Q8NEM2 672 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 DBNDD2Q9BQY9 259 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 TINF2Q9BSI4 451 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 TANGO6Q9C0B7 1094 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 SLC28A3Q9HAS3 691 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 GINM1Q9NU53 330 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 FBXO28Q9NVF7 368 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 EVA1BQ9NVM1 165 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 MSRAQ9UJ68 235 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 DDX49Q9Y6V7 483 aaKnown RBP6.47□□□□□ -1.37
PTPN4-209ENST00000469511 TRANK1O15050 2925 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 GRIN2DO15399 1336 aa6.47□□□□□ -1.37
PTPN4-209ENST00000469511 PI4K2BG5E9Z4 385 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 BAG3O95817 575 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 CD4P01730 458 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 FGBP02675 491 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 ASGR1P07306 291 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 CCNYL3P0C7X3 344 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 CYP2D6P10635 497 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 CYP7A1P22680 504 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 USP14P54578 494 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 BEX3Q00994 111 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 RAB30Q15771 203 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 TMEM63BQ5T3F8 832 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 CCDC82Q8N4S0 544 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 PPP1R13LQ8WUF5 828 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 SCLYQ96I15 445 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 MMP19Q99542 508 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 TSEN34Q9BSV6 310 aaKnown RBP6.46□□□□□ -1.38
PTPN4-209ENST00000469511 WNT8AQ9H1J5 351 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 IL23AQ9NPF7 189 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 TNNQ9UQP3 1299 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 ASTN1O14525 1302 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 PTPRCP08575 1304 aa6.46□□□□□ -1.38
PTPN4-209ENST00000469511 PNMA6EA0A0J9YXQ4 647 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 ARVCFO00192 962 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 SRGAP3O43295 1099 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 LPXNO60711 386 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 HLA-DOAP06340 250 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 CA3P07451 260 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 C6orf222P0C671 652 aaPredicted RBP6.45□□□□□ -1.38
PTPN4-209ENST00000469511 FCER1AP12319 257 aa6.45□□□□□ -1.38
PTPN4-209ENST00000469511 AKR1A1P14550 325 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms