RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 PRPF38BQ5VTL8 546 aaKnown RBP17.49■□□□□ 0.39
TMEM39A-203ENST00000461654 RABGAP1Q9Y3P9 1069 aa17.49■□□□□ 0.39
TMEM39A-203ENST00000461654 MYCP01106 439 aaPredicted RBP17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 CCL5P13501 91 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 MAPK4P31152 587 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 GJA8P48165 433 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 ERVK-9P63128 1117 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 ERVK-24P63145 666 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 PFKFB3Q16875 520 aaPredicted RBP17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 Q3C1V9 767 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 KRT40Q6A162 431 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 KCTD1Q719H9 257 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 PIBF1Q8WXW3 757 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 UBA5Q9GZZ9 404 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 VCPKMTQ9H867 229 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 VAT1LQ9HCJ6 419 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 BRMS1Q9HCU9 246 aa17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 BIN2Q9UBW5 565 aaPredicted RBP17.48■□□□□ 0.39
TMEM39A-203ENST00000461654 CENPFP49454 3210 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 KIAA0100Q14667 2235 aaKnown RBP17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 ZYXQ15942 572 aaKnown RBP17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 RASGRP2Q7LDG7 609 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 FERMT3Q86UX7 667 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 CCDC12Q8WUD4 166 aaPredicted RBP17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 LPAR1Q92633 364 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 AIFM3Q96NN9 605 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 RNF208Q9H0X6 261 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 RIOX1Q9H6W3 641 aa17.47■□□□□ 0.39
TMEM39A-203ENST00000461654 hCG_1642624A0A1W2PR95 340 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 INHAP05111 366 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 XRCC5P13010 732 aaKnown RBP17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 ELNP15502 786 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 PKN1Q16512 942 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 HOMER1Q86YM7 354 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 SPICE1Q8N0Z3 855 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 FAM177A1Q8N128 213 aaPredicted RBP17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 CCDC148Q8NFR7 591 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 SH3GLB2Q9NR46 395 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 HOXC10Q9NYD6 342 aa17.46■□□□□ 0.39
TMEM39A-203ENST00000461654 MYH4Q9Y623 1939 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 TMEM232C9JQI7 657 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 hCG_1984214I3L0E3 225 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 CYTH3O43739 400 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 CNMDO75829 334 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 BAG4O95429 457 aaKnown RBP17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 PTMSP20962 102 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 COG2Q14746 738 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 CLEC17AQ6ZS10 378 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 HEATR3Q7Z4Q2 680 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 BRAPQ7Z569 592 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 ADGRF4Q8IZF3 695 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 ZNF713Q8N859 430 aaPredicted RBP17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 CHURC1Q8WUH1 139 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 SOCS4Q8WXH5 440 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 USP6NLQ92738 828 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 SHISA4Q96DD7 197 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 PIGSQ96S52 555 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 NUDT12Q9BQG2 462 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 UNC93B1Q9H1C4 597 aa17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 RPAP3Q9H6T3 665 aaPredicted RBP17.45■□□□□ 0.38
TMEM39A-203ENST00000461654 WDR46O15213 610 aaKnown RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 PEX10O60683 326 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 SGPL1O95470 568 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 MMP1P03956 469 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 NCLP19338 710 aaKnown RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 CALML3P27482 149 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 SLC16A2P36021 539 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 STAT2P52630 851 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 NLRP5P59047 1200 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 CCNA1P78396 465 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 TRAF1Q13077 416 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 RESTQ13127 1097 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 CSPP1Q1MSJ5 1256 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 FOXD4L6Q3SYB3 417 aaPredicted RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 SYDE2Q5VT97 1194 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 TTBK2Q6IQ55 1244 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 FOXD4L3Q6VB84 417 aaPredicted RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 UBE2Q1Q7Z7E8 422 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 FAM160B2Q86V87 743 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 U2AF1L4Q8WU68 220 aaKnown RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 NUP88Q99567 741 aaPredicted RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 PORCNQ9H237 461 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 CPVLQ9H3G5 476 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 JMJD4Q9H9V9 463 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 PAK6Q9NQU5 681 aaPredicted RBP17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 VPS54Q9P1Q0 977 aa17.44■□□□□ 0.38
TMEM39A-203ENST00000461654 PNMA6FA0A0J9YX94 578 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 SPDYE16A6NNV3 312 aaPredicted RBP17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 DDX11L8A8MPP1 907 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 HMGCRP04035 888 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 MORN1Q5T089 497 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 FAM83BQ5T0W9 1011 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 BTNL9Q6UXG8 535 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 GPR142Q7Z601 462 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 PLEKHH3Q7Z736 793 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 TRMT44Q8IYL2 757 aaKnown RBP17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 ZNF396Q96N95 335 aaPredicted RBP17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 PAGR1Q9BTK6 254 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 CRISPLD2Q9H0B8 497 aa17.43■□□□□ 0.38
TMEM39A-203ENST00000461654 GJB4Q9NTQ9 266 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms