RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PARP1P09874 1014 aaKnown RBP24.82■■□□□ 1.56
HMGB3-205ENST00000455596 RTP1P59025 263 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 SEC23AQ15436 765 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 CCDC144BQ3MJ40 725 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 KIAA1211Q6ZU35 1233 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 RALYLQ86SE5 291 aaKnown RBP24.82■■□□□ 1.56
HMGB3-205ENST00000455596 NCOA7Q8NI08 942 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 FERMT2Q96AC1 680 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 SYNRGQ9UMZ2 1314 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 LTBP2Q14767 1821 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 PTPDC1A2A3K4 754 aa24.81■■□□□ 1.56
HMGB3-205ENST00000455596 E7EWF7 191 aa24.81■■□□□ 1.56
HMGB3-205ENST00000455596 FXR1P51114 621 aaKnown RBP eCLIP24.81■■□□□ 1.56
HMGB3-205ENST00000455596 BAATQ14032 418 aaPredicted RBP24.81■■□□□ 1.56
HMGB3-205ENST00000455596 GDF15Q99988 308 aa24.81■■□□□ 1.56
HMGB3-205ENST00000455596 KATNBL1Q9H079 304 aa24.81■■□□□ 1.56
HMGB3-205ENST00000455596 CPVLQ9H3G5 476 aa24.81■■□□□ 1.56
HMGB3-205ENST00000455596 ASTN1O14525 1302 aa24.81■■□□□ 1.56
HMGB3-205ENST00000455596 A0A1W2PPC1 479 aa24.8■■□□□ 1.56
HMGB3-205ENST00000455596 CDC37Q16543 378 aaPredicted RBP24.8■■□□□ 1.56
HMGB3-205ENST00000455596 ADGRF4Q8IZF3 695 aa24.8■■□□□ 1.56
HMGB3-205ENST00000455596 CLEC4DQ8WXI8 215 aa24.8■■□□□ 1.56
HMGB3-205ENST00000455596 TSEN34Q9BSV6 310 aaKnown RBP24.8■■□□□ 1.56
HMGB3-205ENST00000455596 ADD3Q9UEY8 706 aaKnown RBP24.8■■□□□ 1.56
HMGB3-205ENST00000455596 ATP11BQ9Y2G3 1177 aa24.8■■□□□ 1.56
HMGB3-205ENST00000455596 RBM8AQ9Y5S9 174 aaKnown RBP24.8■■□□□ 1.56
HMGB3-205ENST00000455596 ERICH2A1L162 156 aa24.79■■□□□ 1.56
HMGB3-205ENST00000455596 BMP8BP34820 402 aa24.79■■□□□ 1.56
HMGB3-205ENST00000455596 MAGEA10P43363 369 aaPredicted RBP24.79■■□□□ 1.56
HMGB3-205ENST00000455596 SNX17Q15036 470 aa24.79■■□□□ 1.56
HMGB3-205ENST00000455596 USH1GQ495M9 461 aa24.79■■□□□ 1.56
HMGB3-205ENST00000455596 BMP2KLQ5H9B9 411 aa24.79■■□□□ 1.56
HMGB3-205ENST00000455596 SPC25Q9HBM1 224 aa24.79■■□□□ 1.56
HMGB3-205ENST00000455596 IFIT3O14879 490 aaKnown RBP24.78■■□□□ 1.56
HMGB3-205ENST00000455596 ADCY6O43306 1168 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 DHX16O60231 1041 aaKnown RBP24.78■■□□□ 1.56
HMGB3-205ENST00000455596 C1orf53Q5VUE5 145 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 RNF207Q6ZRF8 634 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 KLHDC9Q8NEP7 349 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 PURBQ96QR8 312 aaKnown RBP24.78■■□□□ 1.56
HMGB3-205ENST00000455596 ESYT1Q9BSJ8 1104 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 PRKAG2Q9UGJ0 569 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 TAF6LQ9Y6J9 622 aa24.78■■□□□ 1.56
HMGB3-205ENST00000455596 LOC102724159A0A0B4J2E5 919 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 A0A1W2PQ45 241 aaPredicted RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 A0A1W2PQY0 241 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 MOXD2PA6NHM9 499 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 C6orf222P0C671 652 aaPredicted RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 CALML3P27482 149 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 CST5P28325 142 aaPredicted RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 ALDH5A1P51649 535 aaPredicted RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 SART3Q15020 963 aaKnown RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 PWP2Q15269 919 aaKnown RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 TRIM60Q495X7 471 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 SLC30A10Q6XR72 485 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 STOX1Q6ZVD7 989 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 SKAP1Q86WV1 359 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 MORC4Q8TE76 937 aa24.77■■□□□ 1.56
HMGB3-205ENST00000455596 UPF3AQ9H1J1 476 aaKnown RBP24.77■■□□□ 1.56
HMGB3-205ENST00000455596 TRIOBPQ9H2D6 2365 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 ACLYP53396 1101 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 GJA9P57773 515 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 TNFAIP2Q03169 654 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 WTAPQ15007 396 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 KCNA10Q16322 511 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 EEPD1Q7L9B9 569 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 PCSK9Q8NBP7 692 aaKnown RBP24.76■■□□□ 1.55
HMGB3-205ENST00000455596 NUP133Q8WUM0 1156 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 LSG1Q9H089 658 aaKnown RBP24.76■■□□□ 1.55
HMGB3-205ENST00000455596 DDX49Q9Y6V7 483 aaKnown RBP24.76■■□□□ 1.55
HMGB3-205ENST00000455596 ABCB11O95342 1321 aa24.76■■□□□ 1.55
HMGB3-205ENST00000455596 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.75■■□□□ 1.55
HMGB3-205ENST00000455596 MYADML2A6NDP7 307 aa24.75■■□□□ 1.55
HMGB3-205ENST00000455596 RPS6P62753 249 aaKnown RBP24.75■■□□□ 1.55
HMGB3-205ENST00000455596 CCSAPQ6IQ19 270 aaPredicted RBP24.75■■□□□ 1.55
HMGB3-205ENST00000455596 NOL8Q76FK4 1167 aaKnown RBP24.75■■□□□ 1.55
HMGB3-205ENST00000455596 FBXO16Q8IX29 292 aaPredicted RBP24.75■■□□□ 1.55
HMGB3-205ENST00000455596 STAG2Q8N3U4 1231 aa24.75■■□□□ 1.55
HMGB3-205ENST00000455596 VAT1LQ9HCJ6 419 aa24.75■■□□□ 1.55
HMGB3-205ENST00000455596 VTA1Q9NP79 307 aa24.75■■□□□ 1.55
HMGB3-205ENST00000455596 KLRF2D3W0D1 207 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 QRICH1Q2TAL8 776 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 IQSEC1Q6DN90 963 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 CHST3Q7LGC8 479 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 RGS22Q8NE09 1264 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 CCDC136Q96JN2 1154 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 MPHOSPH6Q99547 160 aaKnown RBP24.74■■□□□ 1.55
HMGB3-205ENST00000455596 LBHD1Q9BQE6 289 aaPredicted RBP24.74■■□□□ 1.55
HMGB3-205ENST00000455596 UBE2OQ9C0C9 1292 aaKnown RBP24.74■■□□□ 1.55
HMGB3-205ENST00000455596 MAF1Q9H063 256 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 JMJD4Q9H9V9 463 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 STARD7Q9NQZ5 370 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 MAD2L2Q9UI95 211 aa24.74■■□□□ 1.55
HMGB3-205ENST00000455596 KIAA1217Q5T5P2 1943 aa24.73■■□□□ 1.55
HMGB3-205ENST00000455596 IRX5P78411 483 aaPredicted RBP24.73■■□□□ 1.55
HMGB3-205ENST00000455596 MDM2Q00987 491 aaPredicted RBP24.73■■□□□ 1.55
HMGB3-205ENST00000455596 TAPT1Q6NXT6 567 aa24.73■■□□□ 1.55
HMGB3-205ENST00000455596 FBXO11Q86XK2 927 aa24.73■■□□□ 1.55
HMGB3-205ENST00000455596 MB21D2Q8IYB1 491 aaPredicted RBP24.73■■□□□ 1.55
HMGB3-205ENST00000455596 DNERQ8NFT8 737 aa24.73■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms