RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 PLEKHH3Q7Z736 793 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 CCDC83Q8IWF9 413 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 GPKOWQ92917 476 aaPredicted RBP eCLIP15.07■□□□□ 0
VPS33A-202ENST00000451053 COA7Q96BR5 231 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 TMX3Q96JJ7 454 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 SLC26A6Q9BXS9 759 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 CWC22Q9HCG8 908 aaKnown RBP15.07■□□□□ 0
VPS33A-202ENST00000451053 PNMA2Q9UL42 364 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 PCDHA1Q9Y5I3 950 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 MYH6P13533 1939 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 CASP8AP2Q9UKL3 1982 aa15.07■□□□□ 0
VPS33A-202ENST00000451053 PLXNB2O15031 1838 aa15.06■□□□□ 0
VPS33A-202ENST00000451053 NFIBO00712 420 aa15.06■□□□□ 0
VPS33A-202ENST00000451053 HSP90AA1P07900 732 aaKnown RBP15.06■□□□□ 0
VPS33A-202ENST00000451053 CPLX2Q6PUV4 134 aaKnown RBP15.06■□□□□ 0
VPS33A-202ENST00000451053 CHST13Q8NET6 341 aa15.06■□□□□ 0
VPS33A-202ENST00000451053 CLEC4DQ8WXI8 215 aa15.06■□□□□ 0
VPS33A-202ENST00000451053 RNF26Q9BY78 433 aaPredicted RBP15.06■□□□□ 0
VPS33A-202ENST00000451053 ACAD9Q9H845 621 aa15.06■□□□□ 0
VPS33A-202ENST00000451053 ABCB11O95342 1321 aa15.06■□□□□ 0
VPS33A-202ENST00000451053 CDKL5O76039 1030 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 PTPREP23469 700 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 SSRP1Q08945 709 aaKnown RBP15.05■□□□□ -0
VPS33A-202ENST00000451053 PKN1Q16512 942 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 MORN1Q5T089 497 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 WWC2Q6AWC2 1192 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.05■□□□□ -0
VPS33A-202ENST00000451053 OTOP1Q7RTM1 612 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 HEATR3Q7Z4Q2 680 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 NSUN7Q8NE18 718 aaKnown RBP15.05■□□□□ -0
VPS33A-202ENST00000451053 MMP19Q99542 508 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 FBXO40Q9UH90 709 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 GABRQQ9UN88 632 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 IVNS1ABPQ9Y6Y0 642 aa15.05■□□□□ -0
VPS33A-202ENST00000451053 PTPDC1A2A3K4 754 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 SLC15A5A6NIM6 579 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 OPLAHO14841 1288 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 JAK2O60674 1132 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 FCER1AP12319 257 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 SCG2P13521 617 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 AKAP17AQ02040 695 aaKnown RBP15.04■□□□□ -0
VPS33A-202ENST00000451053 PRKCZQ05513 592 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 GRB14Q14449 540 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 KCTD2Q14681 263 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 PFKFB3Q16875 520 aaPredicted RBP15.04■□□□□ -0
VPS33A-202ENST00000451053 TYW1BQ6NUM6 668 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 NSMFQ6X4W1 530 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 TRIM22Q8IYM9 498 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 A1CFQ9NQ94 594 aaKnown RBP15.04■□□□□ -0
VPS33A-202ENST00000451053 PRDM10Q9NQV6 1147 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 RBM27Q9P2N5 1060 aaKnown RBP15.04■□□□□ -0
VPS33A-202ENST00000451053 GJD2Q9UKL4 321 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 MRPL11Q9Y3B7 192 aaKnown RBP15.04■□□□□ -0
VPS33A-202ENST00000451053 TRIM17Q9Y577 477 aa15.04■□□□□ -0
VPS33A-202ENST00000451053 ZNF236Q9UL36 1845 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 STK36Q9NRP7 1315 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 STXBP3O00186 592 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 STRNO43815 780 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 DEXIO95424 95 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 PGK2P07205 417 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 FDPSP14324 419 aaKnown RBP15.03■□□□□ -0
VPS33A-202ENST00000451053 ADORA2AP29274 412 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 TRAF1Q13077 416 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 ABRAQ8N0Z2 381 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 ANKRD35Q8N283 1001 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 TBC1D5Q92609 795 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 USP6NLQ92738 828 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 DDX11Q96FC9 970 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 AIFM3Q96NN9 605 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 SRRDQ9UH36 339 aa15.03■□□□□ -0
VPS33A-202ENST00000451053 RBBP6Q7Z6E9 1792 aaKnown RBP15.03■□□□□ -0
VPS33A-202ENST00000451053 DOCK3Q8IZD9 2030 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 COBLO75128 1261 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 GNRH1P01148 92 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 FLT3LGP49771 235 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 MAP2K5Q13163 448 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 ARHGEF6Q15052 776 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 SLC30A10Q6XR72 485 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 SOCS4Q8WXH5 440 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 SHISA4Q96DD7 197 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 INTS4Q96HW7 963 aaKnown RBP15.02■□□□□ -0
VPS33A-202ENST00000451053 NUDT12Q9BQG2 462 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 BARHL2Q9NY43 387 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 CYP39A1Q9NYL5 469 aa15.02■□□□□ -0
VPS33A-202ENST00000451053 ORC3Q9UBD5 711 aaPredicted RBP15.02■□□□□ -0
VPS33A-202ENST00000451053 DNAJC25-GNG10A0A024R161 153 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 hCG_1984214I3L0E3 225 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 CYP2B6P20813 491 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 HOXD10P28358 340 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 RGS2P41220 211 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 NAPAP54920 295 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 RPS6P62753 249 aaKnown RBP15.01□□□□□ -0.01
VPS33A-202ENST00000451053 CNTN2Q02246 1040 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 CUL4AQ13619 759 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 BAATQ14032 418 aaPredicted RBP15.01□□□□□ -0.01
VPS33A-202ENST00000451053 CTU1Q7Z7A3 348 aaKnown RBP15.01□□□□□ -0.01
VPS33A-202ENST00000451053 ZNF713Q8N859 430 aaPredicted RBP15.01□□□□□ -0.01
VPS33A-202ENST00000451053 RGS22Q8NE09 1264 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 SMARCC2Q8TAQ2 1214 aa15.01□□□□□ -0.01
VPS33A-202ENST00000451053 NPLOC4Q8TAT6 608 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms