RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SENP2Q9HC62 589 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 MAD2L2Q9UI95 211 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 PFASO15067 1338 aa13.34□□□□□ -0.27
COL28A1-203ENST00000435823 PALM3A6NDB9 673 aaPredicted RBP13.33□□□□□ -0.28
COL28A1-203ENST00000435823 TFRCP02786 760 aaKnown RBP13.33□□□□□ -0.28
COL28A1-203ENST00000435823 CALM1P0DP23 149 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 CALM2P0DP24 149 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 CALM3P0DP25 149 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 KIF5BP33176 963 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 TROAPQ12815 778 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 ADCK5Q3MIX3 580 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 NSMFQ6X4W1 530 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 ZNF654Q8IZM8 581 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 STAG2Q8N3U4 1231 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 MSL3Q8N5Y2 521 aaKnown RBP13.33□□□□□ -0.28
COL28A1-203ENST00000435823 KCNB2Q92953 911 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 MAP3K14Q99558 947 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 TINF2Q9BSI4 451 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 VAT1LQ9HCJ6 419 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 A1CFQ9NQ94 594 aaKnown RBP13.33□□□□□ -0.28
COL28A1-203ENST00000435823 SLC12A7Q9Y666 1083 aa13.33□□□□□ -0.28
COL28A1-203ENST00000435823 DNAJC25-GNG10A0A024R161 153 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 MSCO60682 206 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 PSMA5P28066 241 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 CNGA1P29973 690 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 CCND3P30281 292 aaPredicted RBP13.32□□□□□ -0.28
COL28A1-203ENST00000435823 FGD1P98174 961 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 USH1GQ495M9 461 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 MUM1L1Q5H9M0 696 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 SYNE3Q6ZMZ3 975 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 ZNF467Q7Z7K2 595 aaPredicted RBP13.32□□□□□ -0.28
COL28A1-203ENST00000435823 JAKMIP1Q96N16 626 aaKnown RBP13.32□□□□□ -0.28
COL28A1-203ENST00000435823 LRRC2Q9BYS8 371 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 JMJD4Q9H9V9 463 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 GPHNQ9NQX3 736 aaPredicted RBP13.32□□□□□ -0.28
COL28A1-203ENST00000435823 NRBP1Q9UHY1 535 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 SNX14Q9Y5W7 946 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 ABCB11O95342 1321 aa13.32□□□□□ -0.28
COL28A1-203ENST00000435823 IGHA2P01877 340 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 CYBAP13498 195 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 TAL1P17542 331 aaPredicted RBP13.31□□□□□ -0.28
COL28A1-203ENST00000435823 GNAQP50148 359 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 EXOSC10Q01780 885 aaKnown RBP13.31□□□□□ -0.28
COL28A1-203ENST00000435823 TRAF1Q13077 416 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 QRICH1Q2TAL8 776 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 BLOC1S2Q6QNY1 142 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 FBXO11Q86XK2 927 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 SHISA4Q96DD7 197 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 MYL10Q9BUA6 226 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 CRISPLD2Q9H0B8 497 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 CYP39A1Q9NYL5 469 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 DDX20Q9UHI6 824 aaKnown RBP13.31□□□□□ -0.28
COL28A1-203ENST00000435823 CNPY2Q9Y2B0 182 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 SYNGAP1Q96PV0 1343 aa13.31□□□□□ -0.28
COL28A1-203ENST00000435823 PTPDC1A2A3K4 754 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 NFIBO00712 420 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 ZBTB5O15062 677 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 FARP2O94887 1054 aaPredicted RBP13.3□□□□□ -0.28
COL28A1-203ENST00000435823 COL9A3Q14050 684 aaPredicted RBP13.3□□□□□ -0.28
COL28A1-203ENST00000435823 MAMDC4Q6UXC1 1216 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 RNF207Q6ZRF8 634 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 SGMS1Q86VZ5 419 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 HOMER1Q86YM7 354 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 FAM133AQ8N9E0 248 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 TCEANC2Q96MN5 208 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 LZTS2Q9BRK4 669 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 AMNQ9BXJ7 453 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 USP26Q9BXU7 913 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 MRPL11Q9Y3B7 192 aaKnown RBP13.3□□□□□ -0.28
COL28A1-203ENST00000435823 MYH6P13533 1939 aa13.3□□□□□ -0.28
COL28A1-203ENST00000435823 CENPFP49454 3210 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 ASB14A6NK59 587 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 SEPT4O43236 478 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 CNTN2Q02246 1040 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 BAATQ14032 418 aaPredicted RBP13.29□□□□□ -0.28
COL28A1-203ENST00000435823 MICU3Q86XE3 530 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 MCF2L2Q86YR7 1114 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 ANKLE1Q8NAG6 615 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 TRPV1Q8NER1 839 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 CLEC4DQ8WXI8 215 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 MTMR8Q96EF0 704 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 MAF1Q9H063 256 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 RIOX1Q9H6W3 641 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 ADD3Q9UEY8 706 aaKnown RBP13.29□□□□□ -0.28
COL28A1-203ENST00000435823 OGDHLQ9ULD0 1010 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 SMCHD1A6NHR9 2005 aa13.29□□□□□ -0.28
COL28A1-203ENST00000435823 ZBTB43O43298 467 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 GALR2O43603 387 aaPredicted RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 RXRAP19793 462 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 CASTP20810 708 aaKnown RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 RPS6KB1P23443 525 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 CALML3P27482 149 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 SMARCA1P28370 1054 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 PRAMEF19Q5SWL8 479 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 SLC30A10Q6XR72 485 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 ARMCX2Q7L311 632 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 CCDC144CPQ8IYA2 1237 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 FANCBQ8NB91 859 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 RGS22Q8NE09 1264 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 RRP36Q96EU6 259 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms