RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 SLF1Q9BQI6 1058 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 CD248Q9HCU0 757 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 DUSP10Q9Y6W6 482 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 GOLGA6L7A0A1B0GV03 622 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 A0A1W2PQJ5 194 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 RDXP35241 583 aaKnown RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 IL15P40933 162 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 TRAF1Q13077 416 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 IFT88Q13099 833 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 TTF1Q15361 905 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 CMPK2Q5EBM0 449 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 TCP11X2Q5H9J9 407 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 LRRC1Q9BTT6 524 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 CAPN6Q9Y6Q1 641 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 CFAP73A6NFT4 308 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 DNAJC8O75937 253 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 CIAO1O76071 339 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 CYLC1P35663 651 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 PIP4K2AP48426 406 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 CFAP61Q8NHU2 1237 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 ATP6V1G3Q96LB4 118 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 RNF26Q9BY78 433 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 KBTBD4Q9NVX7 518 aa5.72□□□□□ -1.49
RIF1-203ENST00000428287 GREB1LQ9C091 1923 aaPredicted RBP5.72□□□□□ -1.49
RIF1-203ENST00000428287 DOCK3Q8IZD9 2030 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 KCNQ3O43525 872 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 CDC25AP30304 524 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 ROR2Q01974 943 aaKnown RBP5.71□□□□□ -1.49
RIF1-203ENST00000428287 SGSM1Q2NKQ1 1148 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 TBC1D25Q3MII6 688 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 APLFQ8IW19 511 aaPredicted RBP5.71□□□□□ -1.49
RIF1-203ENST00000428287 IFT43Q96FT9 208 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 CALR3Q96L12 384 aaKnown RBP5.71□□□□□ -1.49
RIF1-203ENST00000428287 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.71□□□□□ -1.491e-7■■■■□ 20.8
RIF1-203ENST00000428287 TRIM10Q9UDY6 481 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 C15orf41Q9Y2V0 281 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 MCM3APO60318 1980 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 HSP90B1P14625 803 aaKnown RBP5.71□□□□□ -1.49
RIF1-203ENST00000428287 SEC24CP53992 1094 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 SH2D3CQ8N5H7 860 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 GIMAP7Q8NHV1 300 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 KLHDC4Q8TBB5 520 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 CCHCR1Q8TD31 782 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 CCDC47Q96A33 483 aaKnown RBP5.71□□□□□ -1.49
RIF1-203ENST00000428287 SH3GL3Q99963 347 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 LY9Q9HBG7 655 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 TBX22Q9Y458 520 aa5.71□□□□□ -1.49
RIF1-203ENST00000428287 NHSL1Q5SYE7 1610 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ERICH2A1L162 156 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 TRHP20396 242 aaPredicted RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 SCP2P22307 547 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 PAX7P23759 505 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ATP2C1P98194 919 aaPredicted RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 SPDYCQ5MJ68 293 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 SND1Q7KZF4 910 aaKnown RBP eCLIP5.71□□□□□ -1.5
RIF1-203ENST00000428287 CHST3Q7LGC8 479 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ATL2Q8NHH9 583 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 HSPA9P38646 679 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 TIMM10P62072 90 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 PDIA5Q14554 519 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 CENPPQ6IPU0 288 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 RALYLQ86SE5 291 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 RASSF8Q8NHQ8 419 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 SAAL1Q96ER3 474 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 CCSER1Q9C0I3 900 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 GDF3Q9NR23 364 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 SCN1AP35498 2009 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 A0A087X0B3 334 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 IARSP41252 1262 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 CCNHP51946 323 aaPredicted RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 HSP90AA4PQ58FG1 418 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ANKRD13DQ6ZTN6 518 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 BZW1Q7L1Q6 419 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 GALNT15Q8N3T1 639 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 NSMCE1Q8WV22 266 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 CUL5Q93034 780 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 CNKSR1Q969H4 720 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 PHLPP1O60346 1717 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 IRF6O14896 467 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ZBTB43O43298 467 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 RTN3O95197 1032 aaPredicted RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 GLI1P08151 1106 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 CARSP49589 748 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 CDR1P51861 262 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 HDLBPQ00341 1268 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 TNFAIP8L3Q5GJ75 292 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ARL6IP4Q66PJ3 421 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 CCDC70Q6NSX1 233 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 CCDC84Q86UT8 332 aaPredicted RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 SPATS2LQ9NUQ6 558 aaKnown RBP5.71□□□□□ -1.5
RIF1-203ENST00000428287 SAMM50Q9Y512 469 aa5.71□□□□□ -1.5
RIF1-203ENST00000428287 ATP8B3O60423 1300 aa5.7□□□□□ -1.5
RIF1-203ENST00000428287 SMNDC1O75940 238 aaKnown RBP eCLIP5.7□□□□□ -1.51e-7■□□□□ 8.5
RIF1-203ENST00000428287 ECHS1P30084 290 aa5.7□□□□□ -1.5
RIF1-203ENST00000428287 TRAPPC10P48553 1259 aa5.7□□□□□ -1.5
RIF1-203ENST00000428287 SETQ01105 290 aaPredicted RBP5.7□□□□□ -1.5
RIF1-203ENST00000428287 GALNTL6Q49A17 601 aa5.7□□□□□ -1.5
RIF1-203ENST00000428287 ANKRD20A8PQ5CZ79 823 aa5.7□□□□□ -1.5
RIF1-203ENST00000428287 GKAP1Q5VSY0 366 aaPredicted RBP5.7□□□□□ -1.5
RIF1-203ENST00000428287 HAUS3Q68CZ6 603 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms