RNA–Protein interactions for RNA: ENST00000427455.1

HERPUD2-205, Transcript of HERPUD family member 2, humanhuman

TSL 3

Gene HERPUD2, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-205ENST00000427455 SMCHD1A6NHR9 2005 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 ZBTB5O15062 677 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 ZBTB43O43298 467 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 CYTH3O43739 400 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 CCL5P13501 91 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 TRIM32Q13049 653 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 USH1GQ495M9 461 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 MAP3K21Q5TCX8 1036 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 MFSD14CQ5VZR4 134 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 FBXO11Q86XK2 927 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 CCDC144CPQ8IYA2 1237 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 FANCBQ8NB91 859 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 BRF1Q92994 677 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 TMEM106CQ9BVX2 250 aa29.21■■■□□ 2.27
HERPUD2-205ENST00000427455 IGHA2P01877 340 aa29.2■■■□□ 2.26
HERPUD2-205ENST00000427455 PRKAR2AP13861 404 aaKnown RBP29.2■■■□□ 2.26
HERPUD2-205ENST00000427455 SMARCA1P28370 1054 aa29.2■■■□□ 2.26
HERPUD2-205ENST00000427455 IL17RAQ96F46 866 aa29.2■■■□□ 2.26
HERPUD2-205ENST00000427455 UPF3BQ9BZI7 483 aaKnown RBP29.2■■■□□ 2.26
HERPUD2-205ENST00000427455 ABCB11O95342 1321 aa29.2■■■□□ 2.26
HERPUD2-205ENST00000427455 BRCA2P51587 3418 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 NFIBO00712 420 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 PLEKHA8P1O95397 391 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 IFFO2Q5TF58 517 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 HOMER1Q86YM7 354 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 AMNQ9BXJ7 453 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 UNC93B1Q9H1C4 597 aa29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 RBM28Q9NW13 759 aaKnown RBP29.19■■■□□ 2.26
HERPUD2-205ENST00000427455 GOLGA8BA8MQT2 603 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 SOX10P56693 466 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 CACNB2Q08289 660 aaPredicted RBP29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 APOBRQ0VD83 1088 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 NSMFQ6X4W1 530 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 TMTC3Q6ZXV5 915 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 CLEC4DQ8WXI8 215 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 PIGSQ96S52 555 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 RNF208Q9H0X6 261 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 CYP39A1Q9NYL5 469 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 RPTORQ8N122 1335 aa29.18■■■□□ 2.26
HERPUD2-205ENST00000427455 KIAA0100Q14667 2235 aaKnown RBP29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 GOLGA8AA7E2F4 631 aa29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 POTEB2H3BUK9 544 aa29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 CYP2C19P33261 490 aa29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 TRAF1Q13077 416 aa29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 RTN1Q16799 776 aa29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 HMX1Q9NP08 348 aaPredicted RBP29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 NAP1L2Q9ULW6 460 aaPredicted RBP29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 BAZ2BQ9UIF8 2168 aaKnown RBP29.17■■■□□ 2.26
HERPUD2-205ENST00000427455 NID2Q14112 1375 aa29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 PNMA6FA0A0J9YX94 578 aa29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 ZNF467Q7Z7K2 595 aaPredicted RBP29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 SRBD1Q8N5C6 995 aaKnown RBP29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 MSL3Q8N5Y2 521 aaKnown RBP29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 FAM133AQ8N9E0 248 aa29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 PAK6Q9NQU5 681 aaPredicted RBP29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 MRPL11Q9Y3B7 192 aaKnown RBP29.16■■■□□ 2.26
HERPUD2-205ENST00000427455 PPP1R11O60927 126 aaPredicted RBP29.15■■■□□ 2.26
HERPUD2-205ENST00000427455 RRP36Q96EU6 259 aaKnown RBP29.15■■■□□ 2.26
HERPUD2-205ENST00000427455 TINF2Q9BSI4 451 aa29.15■■■□□ 2.26
HERPUD2-205ENST00000427455 MAF1Q9H063 256 aa29.15■■■□□ 2.26
HERPUD2-205ENST00000427455 PDRG1Q9NUG6 133 aa29.15■■■□□ 2.26
HERPUD2-205ENST00000427455 LCTP09848 1927 aa29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 PTPDC1A2A3K4 754 aa29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 GJB1P08034 283 aa29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 METAP2P50579 478 aaKnown RBP eCLIP29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 TOB2Q14106 344 aaPredicted RBP29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 PPP2R5BQ15173 497 aa29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 RNF207Q6ZRF8 634 aa29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 CMTR1Q8N1G2 835 aaKnown RBP29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 FGD4Q96M96 766 aa29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 SEC63Q9UGP8 760 aaKnown RBP29.14■■■□□ 2.26
HERPUD2-205ENST00000427455 SYNGAP1Q96PV0 1343 aa29.14■■■□□ 2.25
HERPUD2-205ENST00000427455 POTEFA5A3E0 1075 aa29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 EVCP57679 992 aa29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 CNTN2Q02246 1040 aa29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 BAATQ14032 418 aaPredicted RBP29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 MAMDC4Q6UXC1 1216 aa29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 RGS22Q8NE09 1264 aa29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 PCDHA1Q9Y5I3 950 aa29.13■■■□□ 2.25
HERPUD2-205ENST00000427455 CCDC196A0A1B0GTZ2 297 aa29.12■■■□□ 2.25
HERPUD2-205ENST00000427455 CYBAP13498 195 aa29.12■■■□□ 2.25
HERPUD2-205ENST00000427455 SLC30A10Q6XR72 485 aa29.12■■■□□ 2.25
HERPUD2-205ENST00000427455 MCF2L2Q86YR7 1114 aa29.12■■■□□ 2.25
HERPUD2-205ENST00000427455 PIBF1Q8WXW3 757 aa29.12■■■□□ 2.25
HERPUD2-205ENST00000427455 NRBP1Q9UHY1 535 aa29.12■■■□□ 2.25
HERPUD2-205ENST00000427455 CCND3P30281 292 aaPredicted RBP29.11■■■□□ 2.25
HERPUD2-205ENST00000427455 RPS6P62753 249 aaKnown RBP29.11■■■□□ 2.25
HERPUD2-205ENST00000427455 FAM217BQ9NTX9 383 aaPredicted RBP29.11■■■□□ 2.25
HERPUD2-205ENST00000427455 CNTNAP5Q8WYK1 1306 aa29.11■■■□□ 2.25
HERPUD2-205ENST00000427455 SOWAHBA6NEL2 793 aa29.1■■■□□ 2.25
HERPUD2-205ENST00000427455 CALML3P27482 149 aa29.1■■■□□ 2.25
HERPUD2-205ENST00000427455 CDC27P30260 824 aa29.1■■■□□ 2.25
HERPUD2-205ENST00000427455 GJA8P48165 433 aa29.1■■■□□ 2.25
HERPUD2-205ENST00000427455 CCDC82Q8N4S0 544 aa29.1■■■□□ 2.25
HERPUD2-205ENST00000427455 DEFB118Q96PH6 123 aa29.1■■■□□ 2.25
HERPUD2-205ENST00000427455 FUT2Q10981 343 aa29.09■■■□□ 2.25
HERPUD2-205ENST00000427455 TRPV1Q8NER1 839 aa29.09■■■□□ 2.25
HERPUD2-205ENST00000427455 U2AF1L4Q8WU68 220 aaKnown RBP29.09■■■□□ 2.25
HERPUD2-205ENST00000427455 ALDH8A1Q9H2A2 487 aaPredicted RBP29.09■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms