RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 SAGE1Q9NXZ1 904 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGC4Q9Y5F7 938 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA9Q9Y5G4 932 aaKnown RBP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA8Q9Y5G5 932 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA7Q9Y5G6 932 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA6Q9Y5G7 932 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA3Q9Y5H0 932 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHGA2Q9Y5H1 932 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ATP10BO94823 1461 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 NUP153P49790 1475 aaKnown RBP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 SENP3-EIF4A1A0A087X0R7 540 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF862O60290 1169 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 CPB1P15086 417 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF143P52747 638 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ADCY1Q08828 1119 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 ATP13A4Q4VNC1 1196 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 CCDC70Q6NSX1 233 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PGM2L1Q6PCE3 622 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 TXNDC11Q6PKC3 985 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 IFNL2Q8IZJ0 200 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 TEX19Q8NA77 164 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 C1orf162Q8NEQ5 155 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PTPRN2Q92932 1015 aa6.26□□□□□ -1.41
VPS13A-207ENST00000419472 DDX21Q9NR30 783 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS13A-207ENST00000419472 PRSS47A8MTI9 375 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 EXOC5O00471 708 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 PHKG2P15735 406 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 CYP2C19P33261 490 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 RENBPP51606 427 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 RBM10P98175 930 aaKnown RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 GSTM4Q03013 218 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 CCDC184Q52MB2 194 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF280DQ6N043 979 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 CYFIP1Q7L576 1253 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 FAM13CQ8NE31 585 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 AHCYL2Q96HN2 611 aaKnown RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 MENTQ9BUN1 341 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 KLHL11Q9NVR0 708 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 H2AFY2Q9P0M6 372 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 ZNF451Q9Y4E5 1061 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 SNCAIPQ9Y6H5 919 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 COL6A1P12109 1028 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 RECQLP46063 649 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 PDE4BQ07343 736 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 TRIM14Q14142 442 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 LONRF1Q17RB8 773 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 BBS9Q3SYG4 887 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 ALFQ53S48 1182 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 GPR158Q5T848 1215 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 RIPOR1Q6ZS17 1223 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 UBE2R2Q712K3 238 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 CLRN3Q8NCR9 226 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 POF1BQ8WVV4 589 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 HSPBAP1Q96EW2 488 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 FAXDC2Q96IV6 333 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 MRGPRX3Q96LB0 322 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 HERPUD2Q9BSE4 406 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 SLC13A1Q9BZW2 595 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 THG1LQ9NWX6 298 aaKnown RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 DNAJB12Q9NXW2 375 aaKnown RBP6.25□□□□□ -1.41
VPS13A-207ENST00000419472 NAGPAQ9UK23 515 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 DNM3Q9UQ16 869 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 ARHGAP35Q9NRY4 1499 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 ARAP3Q8WWN8 1544 aa6.25□□□□□ -1.41
VPS13A-207ENST00000419472 EFCAB14O75071 495 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 H2AFYO75367 372 aaKnown RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 SLC5A1P13866 664 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 LIG1P18858 919 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 ETF1P62495 437 aaKnown RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 KLF1Q13351 362 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 SART3Q15020 963 aaKnown RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 IFFO2Q5TF58 517 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 CMTR2Q8IYT2 770 aaKnown RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 SMOC1Q9H4F8 434 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 NLRC4Q9NPP4 1024 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 GTF2A1LQ9UNN4 478 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 CCDC18Q5T9S5 1454 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 TSPOAP1O95153 1857 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 FHOD3Q2V2M9 1422 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 F5H423 210 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 SHOXO15266 292 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 CAPN5O15484 640 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 AGR2O95994 175 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 MAN1A1P33908 653 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 FLT3P36888 993 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 GTF2H3Q13889 308 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 KCNT2Q6UVM3 1135 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 PDILTQ8N807 584 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 TMEM145Q8NBT3 493 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 CDC5LQ99459 802 aaKnown RBP6.24□□□□□ -1.41
VPS13A-207ENST00000419472 TJP2Q9UDY2 1190 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 COQ6Q9Y2Z9 468 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 PCDHA8Q9Y5H6 950 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 NEO1Q92859 1461 aa6.24□□□□□ -1.41
VPS13A-207ENST00000419472 ZRANB2O95218 330 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13A-207ENST00000419472 KCNH1O95259 989 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 IL33O95760 270 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 BMP1P13497 986 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 AP3B2Q13367 1082 aa6.23□□□□□ -1.41
VPS13A-207ENST00000419472 B3GNT9Q6UX72 402 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms