RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 MYL10Q9BUA6 226 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 RBM27Q9P2N5 1060 aaKnown RBP16.98■□□□□ 0.31
LIMS1-206ENST00000414829 NAP1L2Q9ULW6 460 aaPredicted RBP16.98■□□□□ 0.31
LIMS1-206ENST00000414829 MGAMO43451 1857 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 DNAJC25-GNG10A0A024R161 153 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 PNMA6FA0A0J9YX94 578 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 METAP2P50579 478 aaKnown RBP eCLIP16.97■□□□□ 0.31
LIMS1-206ENST00000414829 SNAP25P60880 206 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 ZNF792Q3KQV3 632 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 RGS22Q8NE09 1264 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 MAML3Q96JK9 1138 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 HMX1Q9NP08 348 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-206ENST00000414829 A1CFQ9NQ94 594 aaKnown RBP16.97■□□□□ 0.31
LIMS1-206ENST00000414829 PDRG1Q9NUG6 133 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 ADD3Q9UEY8 706 aaKnown RBP16.97■□□□□ 0.31
LIMS1-206ENST00000414829 NID2Q14112 1375 aa16.97■□□□□ 0.31
LIMS1-206ENST00000414829 RPTORQ8N122 1335 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 ZSWIM8A7E2V4 1837 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 B4DLN1 442 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 MSCO60682 206 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 COBLO75128 1261 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 PRKAR2AP13861 404 aaKnown RBP16.96■□□□□ 0.31
LIMS1-206ENST00000414829 MRPL12P52815 198 aaKnown RBP16.96■□□□□ 0.31
LIMS1-206ENST00000414829 USH1GQ495M9 461 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 MAP3K21Q5TCX8 1036 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 NSMFQ6X4W1 530 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 TMTC3Q6ZXV5 915 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 HOMER1Q86YM7 354 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 TEX2Q8IWB9 1127 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 CPVLQ9H3G5 476 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 VAT1LQ9HCJ6 419 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 MAP3K20Q9NYL2 800 aaKnown RBP16.96■□□□□ 0.31
LIMS1-206ENST00000414829 CYP39A1Q9NYL5 469 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 CNPY2Q9Y2B0 182 aa16.96■□□□□ 0.31
LIMS1-206ENST00000414829 SYNGAP1Q96PV0 1343 aa16.96■□□□□ 0.3
LIMS1-206ENST00000414829 ASB14A6NK59 587 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 PGK2P07205 417 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 CCL5P13501 91 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 EVCP57679 992 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 RNF207Q6ZRF8 634 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 NPLOC4Q8TAT6 608 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 UPF3BQ9BZI7 483 aaKnown RBP16.95■□□□□ 0.3
LIMS1-206ENST00000414829 RNF208Q9H0X6 261 aa16.95■□□□□ 0.3
LIMS1-206ENST00000414829 PTPDC1A2A3K4 754 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 hCG_1984214I3L0E3 225 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 GJB1P08034 283 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 CPA1P15085 419 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 RXRAP19793 462 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 COL9A3Q14050 684 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-206ENST00000414829 CCL14Q16627 93 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 MUM1L1Q5H9M0 696 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 CPLX2Q6PUV4 134 aaKnown RBP16.94■□□□□ 0.3
LIMS1-206ENST00000414829 MAMDC4Q6UXC1 1216 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 CCDC144CPQ8IYA2 1237 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 ZNF713Q8N859 430 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-206ENST00000414829 TINF2Q9BSI4 451 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.94■□□□□ 0.3
LIMS1-206ENST00000414829 ALDH8A1Q9H2A2 487 aaPredicted RBP16.94■□□□□ 0.3
LIMS1-206ENST00000414829 BRPF3Q9ULD4 1205 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 PCDHA1Q9Y5I3 950 aa16.94■□□□□ 0.3
LIMS1-206ENST00000414829 NFIBO00712 420 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 CYTH3O43739 400 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 PLEKHA8P1O95397 391 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 APOBRQ0VD83 1088 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 FAM133AQ8N9E0 248 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 DNERQ8NFT8 737 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 CLEC4DQ8WXI8 215 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 ZNF274Q96GC6 653 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-206ENST00000414829 PIGSQ96S52 555 aa16.93■□□□□ 0.3
LIMS1-206ENST00000414829 PAK6Q9NQU5 681 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-206ENST00000414829 PLXNB2O15031 1838 aa16.92■□□□□ 0.3
LIMS1-206ENST00000414829 COL11A1P12107 1806 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-206ENST00000414829 IGHA2P01877 340 aa16.92■□□□□ 0.3
LIMS1-206ENST00000414829 AKAP17AQ02040 695 aaKnown RBP16.92■□□□□ 0.3
LIMS1-206ENST00000414829 CACNB2Q08289 660 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-206ENST00000414829 SRBD1Q8N5C6 995 aaKnown RBP16.92■□□□□ 0.3
LIMS1-206ENST00000414829 C22orf23Q9BZE7 217 aa16.92■□□□□ 0.3
LIMS1-206ENST00000414829 UNC93B1Q9H1C4 597 aa16.92■□□□□ 0.3
LIMS1-206ENST00000414829 CPLX1O14810 134 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 CDKL5O76039 1030 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 CYBAP13498 195 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 CYP2C19P33261 490 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 GJA8P48165 433 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 RBM25P49756 843 aaKnown RBP16.91■□□□□ 0.3
LIMS1-206ENST00000414829 RPS6P62753 249 aaKnown RBP16.91■□□□□ 0.3
LIMS1-206ENST00000414829 GHRHRQ02643 423 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 BAATQ14032 418 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-206ENST00000414829 TOB2Q14106 344 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-206ENST00000414829 MTFR1Q15390 333 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 IFFO2Q5TF58 517 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 PPP1R18Q6NYC8 613 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 FLRT1Q9NZU1 646 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 CNTNAP5Q8WYK1 1306 aa16.91■□□□□ 0.3
LIMS1-206ENST00000414829 SEPT4O43236 478 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 SEC24BO95487 1268 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 CALML3P27482 149 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 PDIA3P30101 505 aaKnown RBP16.9■□□□□ 0.3
LIMS1-206ENST00000414829 SLC30A10Q6XR72 485 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 RAB11FIP4Q86YS3 637 aa16.9■□□□□ 0.3
LIMS1-206ENST00000414829 TRIM22Q8IYM9 498 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms