RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 BTBD7Q9P203 1132 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 MTMR6Q9Y217 621 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 RABGAP1Q9Y3P9 1069 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 PARP14Q460N5 1801 aa20.76■□□□□ 0.91
SDC1-203ENST00000403076 ATP2A1O14983 1001 aa20.76■□□□□ 0.91
SDC1-203ENST00000403076 GCLCP48506 637 aaPredicted RBP20.76■□□□□ 0.91
SDC1-203ENST00000403076 ADCY7P51828 1080 aa20.76■□□□□ 0.91
SDC1-203ENST00000403076 REM2Q8IYK8 340 aaPredicted RBP20.76■□□□□ 0.91
SDC1-203ENST00000403076 RGS22Q8NE09 1264 aa20.76■□□□□ 0.91
SDC1-203ENST00000403076 SHISA4Q96DD7 197 aa20.76■□□□□ 0.91
SDC1-203ENST00000403076 PSTPIP2Q9H939 334 aa20.76■□□□□ 0.91
SDC1-203ENST00000403076 ZNF214Q9UL59 606 aaPredicted RBP20.76■□□□□ 0.91
SDC1-203ENST00000403076 PEX10O60683 326 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 ZSCAN22P10073 491 aaPredicted RBP20.75■□□□□ 0.91
SDC1-203ENST00000403076 KRT2P35908 639 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 VEGFBP49765 207 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 MRPL12P52815 198 aaKnown RBP20.75■□□□□ 0.91
SDC1-203ENST00000403076 C1QTNF8P60827 252 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 GALNT17Q6IS24 598 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 FERMT3Q86UX7 667 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 DIS3L2Q8IYB7 885 aaKnown RBP20.75■□□□□ 0.91
SDC1-203ENST00000403076 BICD2Q8TD16 824 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 TRERF1Q96PN7 1200 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 ZMYND12Q9H0C1 365 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 RBPJLQ9UBG7 517 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 PCDHA4Q9UN74 947 aa20.75■□□□□ 0.91
SDC1-203ENST00000403076 ESYT2A0FGR8 921 aa20.74■□□□□ 0.91
SDC1-203ENST00000403076 TKFCQ3LXA3 575 aa20.74■□□□□ 0.91
SDC1-203ENST00000403076 BLIDQ8IZY5 108 aa20.74■□□□□ 0.91
SDC1-203ENST00000403076 CUL5Q93034 780 aa20.74■□□□□ 0.91
SDC1-203ENST00000403076 SPATC1LQ9H0A9 340 aa20.74■□□□□ 0.91
SDC1-203ENST00000403076 GLT8D2Q9H1C3 349 aa20.74■□□□□ 0.91
SDC1-203ENST00000403076 CNMDO75829 334 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 BRD1O95696 1058 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 HSPA6P17066 643 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 POTEEQ6S8J3 1075 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 ANKRD13CQ8N6S4 541 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 ZFYVE28Q9HCC9 887 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 TXNRD2Q9NNW7 524 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 RIC8AQ9NPQ8 531 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 RNF146Q9NTX7 359 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 BTBD18B2RXH4 712 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 ALDH1A1P00352 501 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 MAP2K2P36507 400 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 RIOX2Q8IUF8 465 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 GPRC5AQ8NFJ5 357 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 OXER1Q8TDS5 423 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 RIPK3Q9Y572 518 aa20.73■□□□□ 0.91
SDC1-203ENST00000403076 COL11A1P12107 1806 aaPredicted RBP20.72■□□□□ 0.91
SDC1-203ENST00000403076 F13A1P00488 732 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 CFBP00751 764 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 ERVK-9P63128 1117 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 ERVK-24P63145 666 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 CCNA1P78396 465 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 NCAPG2Q86XI2 1143 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 MCF2L2Q86YR7 1114 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 CCAR1Q8IX12 1150 aaKnown RBP20.72■□□□□ 0.91
SDC1-203ENST00000403076 DAGLBQ8NCG7 672 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 MOV10L1Q9BXT6 1211 aaKnown RBP20.72■□□□□ 0.91
SDC1-203ENST00000403076 BIN2Q9UBW5 565 aaPredicted RBP20.72■□□□□ 0.91
SDC1-203ENST00000403076 ZDHHC9Q9Y397 364 aa20.72■□□□□ 0.91
SDC1-203ENST00000403076 SLC25A27O95847 323 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 NR5A1Q13285 461 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 Q3C1V9 767 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 MUM1L1Q5H9M0 696 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 USP17L6PQ6QN14 398 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 NSMFQ6X4W1 530 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 REXO1Q8N1G1 1221 aaKnown RBP20.71■□□□□ 0.91
SDC1-203ENST00000403076 CHST13Q8NET6 341 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 FOXP1Q9H334 677 aaPredicted RBP20.71■□□□□ 0.91
SDC1-203ENST00000403076 ZSCAN16Q9H4T2 348 aaPredicted RBP20.71■□□□□ 0.91
SDC1-203ENST00000403076 ACAD9Q9H845 621 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 CPA4Q9UI42 421 aa20.71■□□□□ 0.91
SDC1-203ENST00000403076 KIF28PB7ZC32 967 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 GCOM1H8Y6P7 765 aaPredicted RBP20.7■□□□□ 0.9
SDC1-203ENST00000403076 NFIBO00712 420 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 POLR2MP0CAP2 368 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 COPB2P35606 906 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 NPY5RQ15761 445 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 UBE2SQ16763 222 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 WDR78Q5VTH9 848 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 JAKMIP3Q5VZ66 844 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 RASGRP4Q8TDF6 673 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 CLEC4DQ8WXI8 215 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 FBXO40Q9UH90 709 aa20.7■□□□□ 0.9
SDC1-203ENST00000403076 SMCHD1A6NHR9 2005 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 CCDC194A0A1B0GVG4 234 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 CA12O43570 354 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 RESTQ13127 1097 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 TBC1D5Q92609 795 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 MORF4L1Q9UBU8 362 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 A0A0G2JMZ2 1700 aa20.69■□□□□ 0.9
SDC1-203ENST00000403076 OPLAHO14841 1288 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 ADAMTS3O15072 1205 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 TLR2O60603 784 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 ERCC3P19447 782 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 U2AF2P26368 475 aaKnown RBP eCLIP20.68■□□□□ 0.9
SDC1-203ENST00000403076 HOXA13P31271 388 aaPredicted RBP20.68■□□□□ 0.9
SDC1-203ENST00000403076 CRHR2Q13324 411 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 FAM110CQ1W6H9 321 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms