RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DCP1AQ9NPI6 582 aaPredicted RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 IL17RBQ9NRM6 502 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 EXOC1Q9NV70 894 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 CYTH3O43739 400 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 NOC4LQ9BVI4 516 aaKnown RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 MAGEC2Q9UBF1 373 aaPredicted RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 CICQ96RK0 1608 aaPredicted RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 KRT86O43790 486 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 ATP1A2P50993 1020 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 CCDC152Q4G0S7 254 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 CT47A1Q5JQC4 288 aaPredicted RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 FAM84BQ96KN1 310 aaPredicted RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 RBM28Q9NW13 759 aaKnown RBP23.43■■□□□ 1.34
CTCF-202ENST00000401394 ARHGAP20Q9P2F6 1191 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 TIAM2Q8IVF5 1701 aa23.43■■□□□ 1.34
CTCF-202ENST00000401394 GOLGA6BA6NDN3 693 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 SRGNP10124 158 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 AARSP49588 968 aaKnown RBP eCLIP23.42■■□□□ 1.34
CTCF-202ENST00000401394 TUBB2AQ13885 445 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 MICALL1Q8N3F8 863 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 CELF1Q92879 486 aaKnown RBP23.42■■□□□ 1.34
CTCF-202ENST00000401394 GJA10Q969M2 543 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 TUBB2BQ9BVA1 445 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 GOLGA6CA6NDK9 693 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 EXOC5O00471 708 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 GOLGA6DP0CG33 693 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 CORO7P57737 925 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 INTS5Q6P9B9 1019 aaKnown RBP23.42■■□□□ 1.34
CTCF-202ENST00000401394 TXNRD3Q86VQ6 643 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 IPO4Q8TEX9 1081 aaKnown RBP23.42■■□□□ 1.34
CTCF-202ENST00000401394 GOLGA6AQ9NYA3 693 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 PCDHA6Q9UN73 950 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 PCDHA8Q9Y5H6 950 aa23.42■■□□□ 1.34
CTCF-202ENST00000401394 MAGEA9P43362 315 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 TFAP4Q01664 338 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 TRIM14Q14142 442 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 TTC31Q49AM3 519 aaPredicted RBP23.41■■□□□ 1.34
CTCF-202ENST00000401394 KAT2BQ92831 832 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 VAT1LQ9HCJ6 419 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.41■■□□□ 1.34
CTCF-202ENST00000401394 PARP4Q9UKK3 1724 aaKnown RBP23.41■■□□□ 1.34
CTCF-202ENST00000401394 BMP15O95972 392 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 TECP42680 631 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 IRAK1P51617 712 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 ASIC1P78348 528 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 LETM2Q2VYF4 491 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 DYMQ7RTS9 669 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 MCM9Q9NXL9 1143 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 PACSIN2Q9UNF0 486 aaPredicted RBP23.41■■□□□ 1.34
CTCF-202ENST00000401394 PAPPAQ13219 1627 aa23.41■■□□□ 1.34
CTCF-202ENST00000401394 CCDC194A0A1B0GVG4 234 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 PSMA7O14818 248 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 PPFIA4O75335 1185 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 RPS6KA5O75582 802 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 LRRC41Q15345 812 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 ERFEQ4G0M1 354 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 SECISBP2LQ93073 1101 aaKnown RBP23.4■■□□□ 1.34
CTCF-202ENST00000401394 RMND1Q9NWS8 449 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 MYH3P11055 1940 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 KRT14P02533 472 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 CRKLP46109 303 aaKnown RBP23.4■■□□□ 1.34
CTCF-202ENST00000401394 MEA1Q16626 185 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 GIMAP8Q8ND71 665 aaPredicted RBP23.4■■□□□ 1.34
CTCF-202ENST00000401394 CCDC42Q96M95 316 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 MMRN2Q9H8L6 949 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 SHANK3Q9BYB0 1731 aa23.4■■□□□ 1.34
CTCF-202ENST00000401394 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.4■■□□□ 1.34
CTCF-202ENST00000401394 NUP98P52948 1817 aa23.39■■□□□ 1.34
CTCF-202ENST00000401394 EIF4A3P38919 411 aaKnown RBP23.39■■□□□ 1.34
CTCF-202ENST00000401394 RCAN1P53805 252 aa23.39■■□□□ 1.34
CTCF-202ENST00000401394 GFPT1Q06210 699 aaPredicted RBP23.39■■□□□ 1.34
CTCF-202ENST00000401394 KIF5AQ12840 1032 aa23.39■■□□□ 1.34
CTCF-202ENST00000401394 FBXW10Q5XX13 1052 aa23.39■■□□□ 1.34
CTCF-202ENST00000401394 SEMA6BQ9H3T3 888 aa23.39■■□□□ 1.34
CTCF-202ENST00000401394 NTSR2O95665 410 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 FAM153BP0C7A2 387 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 LONP1P36776 959 aaKnown RBP23.39■■□□□ 1.33
CTCF-202ENST00000401394 ATP6V1AP38606 617 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 IL6STP40189 918 aaPredicted RBP23.39■■□□□ 1.33
CTCF-202ENST00000401394 DNM2P50570 870 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 FAM153CQ494X1 144 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 STRCQ7RTU9 1775 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 KIAA0895Q8NCT3 520 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 FAM76AQ8TAV0 307 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 NSUN4Q96CB9 384 aaKnown RBP23.39■■□□□ 1.33
CTCF-202ENST00000401394 FAM153AQ9UHL3 310 aa23.39■■□□□ 1.33
CTCF-202ENST00000401394 KRT83P78385 493 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 PDCLQ13371 301 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 SPATA4Q8NEY3 305 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 IFIH1Q9BYX4 1025 aaKnown RBP23.38■■□□□ 1.33
CTCF-202ENST00000401394 ACBD3Q9H3P7 528 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 DDAH1O94760 285 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 GNGT1P63211 74 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 TTMPQ5BVD1 217 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 BCAS4Q8TDM0 211 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 KBTBD4Q9NVX7 518 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 STX8Q9UNK0 236 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 BCORQ6W2J9 1755 aa23.38■■□□□ 1.33
CTCF-202ENST00000401394 ERVV-1B6SEH8 477 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 CYLC1P35663 651 aaPredicted RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms