RNA–Protein interactions for RNA: ENST00000399973.1

USP16-202, Transcript of ubiquitin specific peptidase 16, humanhuman

TSL 3

Gene USP16, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-202ENST00000399973 NR2E3Q9Y5X4 410 aa9.83□□□□□ -0.84
USP16-202ENST00000399973 DDX49Q9Y6V7 483 aaKnown RBP9.83□□□□□ -0.84
USP16-202ENST00000399973 WDR19Q8NEZ3 1342 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 SYNGAP1Q96PV0 1343 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 LTBP2Q14767 1821 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 DNM1LO00429 736 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 PRC1O43663 620 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 IGHA2P01877 340 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 AKR1A1P14550 325 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 CALML3P27482 149 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 MNX1P50219 401 aaPredicted RBP9.82□□□□□ -0.84
USP16-202ENST00000399973 ATN1P54259 1190 aaPredicted RBP9.82□□□□□ -0.84
USP16-202ENST00000399973 ANTXR2P58335 489 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 CREB3L3Q68CJ9 461 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 NFXL1Q6ZNB6 911 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP16-202ENST00000399973 ZNF467Q7Z7K2 595 aaPredicted RBP9.82□□□□□ -0.84
USP16-202ENST00000399973 CCDC144CPQ8IYA2 1237 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 MB21D2Q8IYB1 491 aaPredicted RBP9.82□□□□□ -0.84
USP16-202ENST00000399973 ADGRF4Q8IZF3 695 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 ANKS1AQ92625 1134 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 FGD4Q96M96 766 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 SENP6Q9GZR1 1112 aaPredicted RBP9.82□□□□□ -0.84
USP16-202ENST00000399973 SENP2Q9HC62 589 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 CYP39A1Q9NYL5 469 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 NRBP1Q9UHY1 535 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 KIAA1217Q5T5P2 1943 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 SYNRGQ9UMZ2 1314 aa9.82□□□□□ -0.84
USP16-202ENST00000399973 BAZ2BQ9UIF8 2168 aaKnown RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 SOWAHBA6NEL2 793 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 KLRF2D3W0D1 207 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 SNAI1O95863 264 aaPredicted RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 PGK1P00558 417 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 ZNF865P0CJ78 1059 aaPredicted RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 BAATQ14032 418 aaPredicted RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 QRICH1Q2TAL8 776 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 RNF20Q5VTR2 975 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 RNF207Q6ZRF8 634 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 EEPD1Q7L9B9 569 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 CATIPQ7Z7H3 387 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 HOMER1Q86YM7 354 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 STAG2Q8N3U4 1231 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 MSL3Q8N5Y2 521 aaKnown RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 FAM133AQ8N9E0 248 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 ARRDC4Q8NCT1 418 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 NUP133Q8WUM0 1156 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 FERMT2Q96AC1 680 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 PURBQ96QR8 312 aaKnown RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 PNMA2Q9UL42 364 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 ZMYND8Q9ULU4 1186 aaPredicted RBP9.81□□□□□ -0.84
USP16-202ENST00000399973 ABCB11O95342 1321 aa9.81□□□□□ -0.84
USP16-202ENST00000399973 CCDC69A6NI79 296 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 COL6A1P12109 1028 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 SYN1P17600 705 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 MCM5P33992 734 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 ACVR2BQ13705 512 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 GRM4Q14833 912 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 LRRC41Q15345 812 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 LRRC26Q2I0M4 334 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 CCDC144BQ3MJ40 725 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 MAMDC4Q6UXC1 1216 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 CHRDL2Q6WN34 429 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 NOL8Q76FK4 1167 aaKnown RBP9.8□□□□□ -0.84
USP16-202ENST00000399973 RNF180Q86T96 592 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 FBXO11Q86XK2 927 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 RAB11FIP4Q86YS3 637 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 FBXO16Q8IX29 292 aaPredicted RBP9.8□□□□□ -0.84
USP16-202ENST00000399973 PIBF1Q8WXW3 757 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 MYL10Q9BUA6 226 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 LRRC2Q9BYS8 371 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 ABHD16BQ9H3Z7 469 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 JMJD4Q9H9V9 463 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 GPHNQ9NQX3 736 aaPredicted RBP9.8□□□□□ -0.84
USP16-202ENST00000399973 PPP4R2Q9NY27 417 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 ADD3Q9UEY8 706 aaKnown RBP9.8□□□□□ -0.84
USP16-202ENST00000399973 FAM184BQ9ULE4 1060 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 ASTN1O14525 1302 aa9.8□□□□□ -0.84
USP16-202ENST00000399973 ASB14A6NK59 587 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 SH2B2O14492 632 aaPredicted RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 C6orf222P0C671 652 aaPredicted RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 RXRAP19793 462 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 ADCYAP1R1P41586 468 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 ALDH5A1P51649 535 aaPredicted RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 RPS6P62753 249 aaKnown RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 COL9A3Q14050 684 aaPredicted RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 NECTIN1Q15223 517 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 ZNF654Q8IZM8 581 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 CTCFLQ8NI51 663 aaPredicted RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 CLEC4DQ8WXI8 215 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 MPHOSPH6Q99547 160 aaKnown RBP9.79□□□□□ -0.84
USP16-202ENST00000399973 LY9Q9HBG7 655 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 PCDH10Q9P2E7 1040 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 MAD2L2Q9UI95 211 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 ATP11BQ9Y2G3 1177 aa9.79□□□□□ -0.84
USP16-202ENST00000399973 MYADML2A6NDP7 307 aa9.78□□□□□ -0.84
USP16-202ENST00000399973 ADCY6O43306 1168 aa9.78□□□□□ -0.84
USP16-202ENST00000399973 DDAH1O94760 285 aa9.78□□□□□ -0.84
USP16-202ENST00000399973 RTP1P59025 263 aa9.78□□□□□ -0.84
USP16-202ENST00000399973 TNFAIP2Q03169 654 aa9.78□□□□□ -0.84
USP16-202ENST00000399973 PDE4DQ08499 809 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms