RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 CATIPQ7Z7H3 387 aa27.6■■■□□ 2.01
SHMT1-204ENST00000395682 CLEC4DQ8WXI8 215 aa27.6■■■□□ 2.01
SHMT1-204ENST00000395682 MTA3Q9BTC8 594 aa27.6■■■□□ 2.01
SHMT1-204ENST00000395682 JMJD4Q9H9V9 463 aa27.6■■■□□ 2.01
SHMT1-204ENST00000395682 GPHNQ9NQX3 736 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-204ENST00000395682 TROAPQ12815 778 aa27.59■■■□□ 2.01
SHMT1-204ENST00000395682 COL9A3Q14050 684 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-204ENST00000395682 USH1GQ495M9 461 aa27.59■■■□□ 2.01
SHMT1-204ENST00000395682 ARMCX2Q7L311 632 aa27.59■■■□□ 2.01
SHMT1-204ENST00000395682 CCDC144CPQ8IYA2 1237 aa27.59■■■□□ 2.01
SHMT1-204ENST00000395682 LY9Q9HBG7 655 aa27.59■■■□□ 2.01
SHMT1-204ENST00000395682 CDKN2AIPQ9NXV6 580 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-204ENST00000395682 PTPDC1A2A3K4 754 aa27.58■■■□□ 2.01
SHMT1-204ENST00000395682 QRICH1Q2TAL8 776 aa27.58■■■□□ 2.01
SHMT1-204ENST00000395682 ARRDC4Q8NCT1 418 aa27.58■■■□□ 2.01
SHMT1-204ENST00000395682 TMEM87BQ96K49 555 aa27.58■■■□□ 2.01
SHMT1-204ENST00000395682 PURBQ96QR8 312 aaKnown RBP27.58■■■□□ 2.01
SHMT1-204ENST00000395682 ZHX1Q9UKY1 873 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-204ENST00000395682 ASB14A6NK59 587 aa27.57■■■□□ 2
SHMT1-204ENST00000395682 ACVR2BQ13705 512 aa27.57■■■□□ 2
SHMT1-204ENST00000395682 RASEFQ8IZ41 740 aa27.57■■■□□ 2
SHMT1-204ENST00000395682 TMTC2Q8N394 836 aa27.57■■■□□ 2
SHMT1-204ENST00000395682 ABHD16BQ9H3Z7 469 aa27.57■■■□□ 2
SHMT1-204ENST00000395682 RARBP10826 455 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 COL6A1P12109 1028 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 AKR1A1P14550 325 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 TSGA10IPQ3SY00 556 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 GJC2Q5T442 439 aaPredicted RBP27.56■■■□□ 2
SHMT1-204ENST00000395682 NFXL1Q6ZNB6 911 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 RNF207Q6ZRF8 634 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 FBXO11Q86XK2 927 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 NUP133Q8WUM0 1156 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 NEK1Q96PY6 1258 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 FAM184BQ9ULE4 1060 aa27.56■■■□□ 2
SHMT1-204ENST00000395682 SH2B2O14492 632 aaPredicted RBP27.55■■■□□ 2
SHMT1-204ENST00000395682 MYCNP04198 464 aaPredicted RBP27.55■■■□□ 2
SHMT1-204ENST00000395682 CALML3P27482 149 aa27.55■■■□□ 2
SHMT1-204ENST00000395682 ZNF654Q8IZM8 581 aa27.55■■■□□ 2
SHMT1-204ENST00000395682 ASTN1O14525 1302 aa27.55■■■□□ 2
SHMT1-204ENST00000395682 CCDC69A6NI79 296 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 DNM1LO00429 736 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 EVI5O60447 810 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 ABCB11O95342 1321 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 LRRC2Q9BYS8 371 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 XPNPEP3Q9NQH7 507 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 NR2E3Q9Y5X4 410 aa27.54■■■□□ 2
SHMT1-204ENST00000395682 H0YGN5 161 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 LIFRP42702 1097 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 KRT32Q14532 448 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 SLC30A10Q6XR72 485 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 RGS22Q8NE09 1264 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 MTMR8Q96EF0 704 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 MAP3K14Q99558 947 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 MYL10Q9BUA6 226 aa27.53■■■□□ 2
SHMT1-204ENST00000395682 SENP6Q9GZR1 1112 aaPredicted RBP27.53■■■□□ 2
SHMT1-204ENST00000395682 ADD3Q9UEY8 706 aaKnown RBP27.53■■■□□ 2
SHMT1-204ENST00000395682 DDX49Q9Y6V7 483 aaKnown RBP27.53■■■□□ 2
SHMT1-204ENST00000395682 ZBTB5O15062 677 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 DDAH1O94760 285 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 REC8O95072 547 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 RPS6P62753 249 aaKnown RBP27.52■■■□□ 2
SHMT1-204ENST00000395682 LRRC41Q15345 812 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 SLC35G1Q2M3R5 365 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 ADCK5Q3MIX3 580 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 CCDC144BQ3MJ40 725 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 LENG1Q96BZ8 264 aaPredicted RBP27.52■■■□□ 2
SHMT1-204ENST00000395682 AMNQ9BXJ7 453 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 KATNBL1Q9H079 304 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 RIOX1Q9H6W3 641 aa27.52■■■□□ 2
SHMT1-204ENST00000395682 MRPL11Q9Y3B7 192 aaKnown RBP27.52■■■□□ 2
SHMT1-204ENST00000395682 FRMPD3Q5JV73 1810 aa27.51■■□□□ 1.99
SHMT1-204ENST00000395682 KBTBD13C9JR72 458 aa27.51■■□□□ 1.99
SHMT1-204ENST00000395682 PGK1P00558 417 aa27.51■■□□□ 1.99
SHMT1-204ENST00000395682 EXOSC10Q01780 885 aaKnown RBP27.51■■□□□ 1.99
SHMT1-204ENST00000395682 DHX32Q7L7V1 743 aaKnown RBP27.51■■□□□ 1.99
SHMT1-204ENST00000395682 CTCFLQ8NI51 663 aaPredicted RBP27.51■■□□□ 1.99
SHMT1-204ENST00000395682 TBC1D5Q92609 795 aa27.51■■□□□ 1.99
SHMT1-204ENST00000395682 MCM3APO60318 1980 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 KIF5BP33176 963 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 HOMER1Q86YM7 354 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 MCF2L2Q86YR7 1114 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 KCNB2Q92953 911 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 PIGSQ96S52 555 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 MAF1Q9H063 256 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 SLC12A7Q9Y666 1083 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 CEP290O15078 2479 aa27.5■■□□□ 1.99
SHMT1-204ENST00000395682 CYTH3O43739 400 aa27.49■■□□□ 1.99
SHMT1-204ENST00000395682 PPP1R11O60927 126 aaPredicted RBP27.49■■□□□ 1.99
SHMT1-204ENST00000395682 HSPA4P34932 840 aa27.49■■□□□ 1.99
SHMT1-204ENST00000395682 ALDH5A1P51649 535 aaPredicted RBP27.49■■□□□ 1.99
SHMT1-204ENST00000395682 EEPD1Q7L9B9 569 aa27.49■■□□□ 1.99
SHMT1-204ENST00000395682 RNF180Q86T96 592 aa27.49■■□□□ 1.99
SHMT1-204ENST00000395682 MORC4Q8TE76 937 aa27.49■■□□□ 1.99
SHMT1-204ENST00000395682 PCDHA1Q9Y5I3 950 aa27.49■■□□□ 1.99
SHMT1-204ENST00000395682 DUSP11O75319 330 aaKnown RBP27.48■■□□□ 1.99
SHMT1-204ENST00000395682 CALM1P0DP23 149 aa27.48■■□□□ 1.99
SHMT1-204ENST00000395682 CALM2P0DP24 149 aa27.48■■□□□ 1.99
SHMT1-204ENST00000395682 CALM3P0DP25 149 aa27.48■■□□□ 1.99
SHMT1-204ENST00000395682 TCEANC2Q96MN5 208 aa27.48■■□□□ 1.99
SHMT1-204ENST00000395682 LOC102724159A0A0B4J2E5 919 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms