RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SMARCA1P28370 1054 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 CYP2C19P33261 490 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 GNAQP50148 359 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 FGD1P98174 961 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 SLC35G1Q2M3R5 365 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 ZNF467Q7Z7K2 595 aaPredicted RBP25.24■■□□□ 1.63
CLN3-207ENST00000395653 MSL3Q8N5Y2 521 aaKnown RBP25.24■■□□□ 1.63
CLN3-207ENST00000395653 ZSWIM6Q9HCJ5 1215 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 ABCB11O95342 1321 aa25.24■■□□□ 1.63
CLN3-207ENST00000395653 ZBTB5O15062 677 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 CYTH3O43739 400 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 RGS19P49795 217 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 USH1GQ495M9 461 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 Q6ZUG5 572 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 MICU3Q86XE3 530 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 FBXO11Q86XK2 927 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 FAM133AQ8N9E0 248 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 CLEC4DQ8WXI8 215 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 TINF2Q9BSI4 451 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 SPZ1Q9BXG8 430 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 AGXT2Q9BYV1 514 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 CYP39A1Q9NYL5 469 aa25.23■■□□□ 1.63
CLN3-207ENST00000395653 POTEB2H3BUK9 544 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 NFIBO00712 420 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 RXRAP19793 462 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 GJA8P48165 433 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 RCAN1P53805 252 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 ANAPC15P60006 121 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 NSMFQ6X4W1 530 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 RUFY3Q7L099 469 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 FANCBQ8NB91 859 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 AMNQ9BXJ7 453 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 BRPF3Q9ULD4 1205 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 SMCHD1A6NHR9 2005 aa25.22■■□□□ 1.63
CLN3-207ENST00000395653 CAPN2P17655 700 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 C8orf34Q49A92 452 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 MAMDC4Q6UXC1 1216 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 U2AF1L4Q8WU68 220 aaKnown RBP25.21■■□□□ 1.63
CLN3-207ENST00000395653 FGD4Q96M96 766 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 DEFB118Q96PH6 123 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 PIGSQ96S52 555 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 MAF1Q9H063 256 aa25.21■■□□□ 1.63
CLN3-207ENST00000395653 KLF18A0A0U1RQI7 1052 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 ZBTB43O43298 467 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 SGPL1O95470 568 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 CYBAP13498 195 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 TRAF1Q13077 416 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 HOMER1Q86YM7 354 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 RAB11FIP4Q86YS3 637 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 CCDC144CPQ8IYA2 1237 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 RGS22Q8NE09 1264 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 NRBP1Q9UHY1 535 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 CYP46A1Q9Y6A2 500 aa25.2■■□□□ 1.63
CLN3-207ENST00000395653 SYNGAP1Q96PV0 1343 aa25.2■■□□□ 1.62
CLN3-207ENST00000395653 PLEKHA8P1O95397 391 aa25.2■■□□□ 1.62
CLN3-207ENST00000395653 SEC24BO95487 1268 aa25.2■■□□□ 1.62
CLN3-207ENST00000395653 EN2P19622 333 aaPredicted RBP25.2■■□□□ 1.62
CLN3-207ENST00000395653 CCND3P30281 292 aaPredicted RBP25.2■■□□□ 1.62
CLN3-207ENST00000395653 CNTN2Q02246 1040 aa25.2■■□□□ 1.62
CLN3-207ENST00000395653 BAATQ14032 418 aaPredicted RBP25.2■■□□□ 1.62
CLN3-207ENST00000395653 BRF1Q92994 677 aa25.2■■□□□ 1.62
CLN3-207ENST00000395653 RBM28Q9NW13 759 aaKnown RBP25.2■■□□□ 1.62
CLN3-207ENST00000395653 MRPL11Q9Y3B7 192 aaKnown RBP25.2■■□□□ 1.62
CLN3-207ENST00000395653 PNMA6FA0A0J9YX94 578 aa25.19■■□□□ 1.62
CLN3-207ENST00000395653 PPP1R11O60927 126 aaPredicted RBP25.19■■□□□ 1.62
CLN3-207ENST00000395653 RNF207Q6ZRF8 634 aa25.19■■□□□ 1.62
CLN3-207ENST00000395653 SRBD1Q8N5C6 995 aaKnown RBP25.19■■□□□ 1.62
CLN3-207ENST00000395653 SHISA4Q96DD7 197 aa25.19■■□□□ 1.62
CLN3-207ENST00000395653 CRISPLD2Q9H0B8 497 aa25.19■■□□□ 1.62
CLN3-207ENST00000395653 GTF3C3Q9Y5Q9 886 aa25.19■■□□□ 1.62
CLN3-207ENST00000395653 MYH6P13533 1939 aa25.19■■□□□ 1.62
CLN3-207ENST00000395653 PTPDC1A2A3K4 754 aa25.18■■□□□ 1.62
CLN3-207ENST00000395653 TMTC3Q6ZXV5 915 aa25.18■■□□□ 1.62
CLN3-207ENST00000395653 TRPV1Q8NER1 839 aa25.18■■□□□ 1.62
CLN3-207ENST00000395653 IL17RAQ96F46 866 aa25.18■■□□□ 1.62
CLN3-207ENST00000395653 PCDHA1Q9Y5I3 950 aa25.18■■□□□ 1.62
CLN3-207ENST00000395653 SOWAHBA6NEL2 793 aa25.17■■□□□ 1.62
CLN3-207ENST00000395653 RPS6P62753 249 aaKnown RBP25.17■■□□□ 1.62
CLN3-207ENST00000395653 APOBRQ0VD83 1088 aa25.17■■□□□ 1.62
CLN3-207ENST00000395653 PPP2R5BQ15173 497 aa25.17■■□□□ 1.62
CLN3-207ENST00000395653 RTN1Q16799 776 aa25.17■■□□□ 1.62
CLN3-207ENST00000395653 SLC30A10Q6XR72 485 aa25.17■■□□□ 1.62
CLN3-207ENST00000395653 MCF2L2Q86YR7 1114 aa25.17■■□□□ 1.62
CLN3-207ENST00000395653 RRP36Q96EU6 259 aaKnown RBP25.17■■□□□ 1.62
CLN3-207ENST00000395653 UPF3BQ9BZI7 483 aaKnown RBP25.17■■□□□ 1.62
CLN3-207ENST00000395653 ADD3Q9UEY8 706 aaKnown RBP25.17■■□□□ 1.62
CLN3-207ENST00000395653 GOLGA8AA7E2F4 631 aa25.16■■□□□ 1.62
CLN3-207ENST00000395653 GOLGA8BA8MQT2 603 aa25.16■■□□□ 1.62
CLN3-207ENST00000395653 MSCO60682 206 aa25.16■■□□□ 1.62
CLN3-207ENST00000395653 EVCP57679 992 aa25.16■■□□□ 1.62
CLN3-207ENST00000395653 CNPY2Q9Y2B0 182 aa25.16■■□□□ 1.62
CLN3-207ENST00000395653 NID2Q14112 1375 aa25.16■■□□□ 1.62
CLN3-207ENST00000395653 LOC102724159A0A0B4J2E5 919 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 ASB14A6NK59 587 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 SNAI1O95863 264 aaPredicted RBP25.15■■□□□ 1.62
CLN3-207ENST00000395653 CNGA1P29973 690 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 PWP2Q15269 919 aaKnown RBP25.15■■□□□ 1.62
CLN3-207ENST00000395653 PRAMEF19Q5SWL8 479 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 ARMCX2Q7L311 632 aa25.15■■□□□ 1.62
CLN3-207ENST00000395653 CMTR1Q8N1G2 835 aaKnown RBP25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms