RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ACTR5Q9H9F9 607 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 SCG2P13521 617 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 CYP27A1Q02318 531 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 ARMC9Q7Z3E5 817 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 RETREG2Q8NC44 543 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 OR52Z1P0C646 297 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 SLFN14P0C7P3 912 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 ZSCAN10Q96SZ4 725 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 RIC8AQ9NPQ8 531 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 EXOC7Q9UPT5 735 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 ALS2CLQ60I27 953 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 RUNDC3BQ96NL0 473 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 CROCC2H7BZ55 1655 aa21.41■■□□□ 1.02
CCDC88B-202ENST00000356786 USP27XA6NNY8 438 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 SETSIPP0DME0 302 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 LONP1P36776 959 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 CLEC17AQ6ZS10 378 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 PALM2Q8IXS6 379 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 IRX4P78413 519 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 SLC7A5Q01650 507 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 FAM133BQ5BKY9 247 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 CASC4Q6P4E1 433 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 LRRC8CQ8TDW0 803 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 ZDHHC9Q9Y397 364 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 DDB1Q16531 1140 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 FAM26FQ5R3K3 315 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 FOXP1Q9H334 677 aaPredicted RBP21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 KDRP35968 1356 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 LRRIQ1Q96JM4 1722 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 PDCLQ13371 301 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 MAGOHBQ96A72 148 aaKnown RBP21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 COPRSQ9NQ92 184 aa21.4■■□□□ 1.02
CCDC88B-202ENST00000356786 CYP2J2P51589 502 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 DHX9Q08211 1270 aaKnown RBP21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 ADAM9Q13443 819 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 PPP2R5DQ14738 602 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 PHF23Q9BUL5 403 aaPredicted RBP21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 LARSQ9P2J5 1176 aaKnown RBP21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 DAAM1Q9Y4D1 1078 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 TACC3Q9Y6A5 838 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 PCDH11XQ9BZA7 1347 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 PCDH11YQ9BZA8 1340 aa21.39■■□□□ 1.02
CCDC88B-202ENST00000356786 TOM1O60784 492 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 NECTIN1Q15223 517 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 ZMYM1Q5SVZ6 1142 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 MAP3K21Q5TCX8 1036 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 OGFOD1Q8N543 542 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 ARHGAP31Q2M1Z3 1444 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 EPC1Q9H2F5 836 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 PLTPP55058 493 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 PLA2G4DQ86XP0 818 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 BCAP29Q9UHQ4 241 aa21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 NOVA2Q9UNW9 492 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-202ENST00000356786 MPHOSPH6Q99547 160 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 TYW1Q9NV66 732 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 RNF14Q9UBS8 474 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 PASKQ96RG2 1323 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 CHUKO15111 745 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 SLC1A4P43007 532 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 LRRC24Q50LG9 513 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 SCYL3Q8IZE3 742 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 GRK7Q8WTQ7 553 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 ATP7BP35670 1465 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 FTCDO95954 541 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 CD19P15391 556 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 TRPC3Q13507 836 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 GPKOWQ92917 476 aaPredicted RBP eCLIP21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 ATP2A3Q93084 1043 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 PCDHA12Q9UN75 941 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 STK24Q9Y6E0 443 aa21.38■■□□□ 1.01
CCDC88B-202ENST00000356786 AATKQ6ZMQ8 1374 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 MOCS3O95396 460 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 MYCNP04198 464 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 SNX16P57768 344 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 IL9RQ01113 521 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 TTLL12Q14166 644 aaPredicted RBP21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 SDR42E1Q8WUS8 393 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 RIMBP2O15034 1052 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 EMBQ6PCB8 327 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 PGBD1Q96JS3 809 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 BTG4Q9NY30 223 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 USH1CQ9Y6N9 552 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 TRPM1Q7Z4N2 1603 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 PGRMC1O00264 195 aaKnown RBP21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 ZBED6P86452 979 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 ADCY1Q08828 1119 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 PARP10Q53GL7 1025 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 NEK8Q86SG6 692 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 PANK4Q9NVE7 773 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 MRPS25P82663 173 aaKnown RBP21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 TAF11Q15544 211 aa21.37■■□□□ 1.01
CCDC88B-202ENST00000356786 PRR36Q9H6K5 1346 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 UBAP1LF5GYI3 381 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 PFDN1O60925 122 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 NR5A1Q13285 461 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 DHTKD1Q96HY7 919 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 TFCP2L1Q9NZI6 479 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 MAP3K4Q9Y6R4 1608 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 MROH5Q6ZUA9 1318 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms