RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 EPC1Q9H2F5 836 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 RBM28Q9NW13 759 aaKnown RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 PPP2R2CQ9Y2T4 447 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 KLRF2D3W0D1 207 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 EEF2P13639 858 aaKnown RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 HIRAP54198 1017 aaPredicted RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 GRIN1Q05586 938 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TBX2Q13207 712 aaPredicted RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 PPP2R5BQ15173 497 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 PRAMEF18Q5VWM3 479 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 CCDC84Q86UT8 332 aaPredicted RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 FCHSD1Q86WN1 690 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TRIM22Q8IYM9 498 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 TRPM4Q8TD43 1214 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 PHF20Q9BVI0 1012 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 SRRTQ9BXP5 876 aaKnown RBP9.74□□□□□ -0.85
TRIM55-204ENST00000353317 FZD1Q9UP38 647 aa9.74□□□□□ -0.85
TRIM55-204ENST00000353317 ERICH4A6NGS2 130 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 EFCAB8A8MWE9 144 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 ZSCAN12O43309 604 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 GH2P01242 217 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 EPS15P42566 896 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 ATP2B2Q01814 1243 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 FMR1Q06787 632 aaKnown RBP eCLIP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 KIAA1755Q5JYT7 1200 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 TMCO3Q6UWJ1 677 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 DIS3L2Q8IYB7 885 aaKnown RBP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 WDR24Q96S15 920 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 MYO1BO43795 1136 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 SEC31AO94979 1220 aaKnown RBP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 TTLL1O95922 423 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 SNHG28P0DPA3 235 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 ADKP55263 362 aaKnown RBP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 TRIM29Q14134 588 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 RASA3Q14644 834 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 PFKFB3Q16875 520 aaPredicted RBP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 KRI1Q8N9T8 703 aaKnown RBP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 TC2NQ8N9U0 490 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 BAG1Q99933 345 aaPredicted RBP9.73□□□□□ -0.85
TRIM55-204ENST00000353317 VAT1LQ9HCJ6 419 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 MAN1B1Q9UKM7 699 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 NFE2L3Q9Y4A8 694 aa9.73□□□□□ -0.85
TRIM55-204ENST00000353317 DDNO94850 711 aaPredicted RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 ZNF18P17022 549 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 SLC16A2P36021 539 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 ECE1P42892 770 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 TOGARAM2Q6ZUX3 1019 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 NOSTRINQ8IVI9 506 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 PDILTQ8N807 584 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 TNFRSF25Q93038 417 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 MED15Q96RN5 788 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 GPCPD1Q9NPB8 672 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 ARGLU1Q9NWB6 273 aaPredicted RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 HACL1Q9UJ83 578 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 COL2A1P02458 1487 aaPredicted RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 POLR2DO15514 142 aaKnown RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 STX10O60499 249 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 PRR29P0C7W0 189 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 SCG2P13521 617 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 LMNB1P20700 586 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 GNG11P61952 73 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 MAP3K9P80192 1104 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 POSTNQ15063 836 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 ABCB5Q2M3G0 1257 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 CCDC178Q5BJE1 867 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 NT5DC1Q5TFE4 455 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 SPECC1LQ69YQ0 1117 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 WWC2Q6AWC2 1192 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 KCTD1Q719H9 257 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 TRMT44Q8IYL2 757 aaKnown RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 ACER1Q8TDN7 264 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 NUP88Q99567 741 aaPredicted RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 GLIS2Q9BZE0 524 aaPredicted RBP9.72□□□□□ -0.85
TRIM55-204ENST00000353317 ATAD5Q96QE3 1844 aa9.72□□□□□ -0.85
TRIM55-204ENST00000353317 CCDC66A2RUB6 948 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 PARP1P09874 1014 aaKnown RBP9.71□□□□□ -0.85
TRIM55-204ENST00000353317 RPS12P25398 132 aaKnown RBP9.71□□□□□ -0.85
TRIM55-204ENST00000353317 KIF5BP33176 963 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 CYP2C19P33261 490 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 SARSP49591 514 aaKnown RBP9.71□□□□□ -0.85
TRIM55-204ENST00000353317 NT5C2P49902 561 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 FAM193AP78312 1265 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 FKBP1CQ5VVH2 108 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 FAM83AQ86UY5 434 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 ELOA2Q8IYF1 753 aaPredicted RBP9.71□□□□□ -0.85
TRIM55-204ENST00000353317 GRAMD1CQ8IYS0 662 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 RASGRP4Q8TDF6 673 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 CCDC17Q96LX7 622 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 PIGSQ96S52 555 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 TMOD2Q9NZR1 351 aa9.71□□□□□ -0.85
TRIM55-204ENST00000353317 FBXO2Q9UK22 296 aaPredicted RBP9.71□□□□□ -0.85
TRIM55-204ENST00000353317 PHF20L1A8MW92 1017 aa9.71□□□□□ -0.86
TRIM55-204ENST00000353317 PPP1R11O60927 126 aaPredicted RBP9.71□□□□□ -0.86
TRIM55-204ENST00000353317 SASH3O75995 380 aa9.71□□□□□ -0.86
TRIM55-204ENST00000353317 CDK11BP21127 795 aaKnown RBP9.71□□□□□ -0.86
TRIM55-204ENST00000353317 PTPREP23469 700 aa9.71□□□□□ -0.86
TRIM55-204ENST00000353317 KIF4BQ2VIQ3 1234 aa9.71□□□□□ -0.86
TRIM55-204ENST00000353317 MKL1Q969V6 931 aa9.71□□□□□ -0.86
TRIM55-204ENST00000353317 KIFC2Q96AC6 838 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms