RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SPECC1Q5M775 1068 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 NOL9Q5SY16 702 aaKnown RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 CATSPERGQ6ZRH7 1159 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 PRRT2Q7Z6L0 340 aaPredicted RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 TRERF1Q96PN7 1200 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 BRMS1Q9HCU9 246 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 PASKQ96RG2 1323 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 STXBP3O00186 592 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 F13A1P00488 732 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 ADCY7P51828 1080 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 NFKBIBQ15653 356 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 FASTKD5Q7L8L6 764 aaKnown RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 MTA3Q9BTC8 594 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 SPZ1Q9BXG8 430 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 PANK2Q9BZ23 570 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 PORCNQ9H237 461 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 KRT2P35908 639 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 CHMP4BP1P59074 171 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 SF3A1Q15459 793 aaKnown RBP10.55□□□□□ -0.72
USP4-202ENST00000351842 REXO1Q8N1G1 1221 aaKnown RBP10.55□□□□□ -0.72
USP4-202ENST00000351842 FBXL16Q8N461 479 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 MS4A4AQ96JQ5 239 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 GZF1Q9H116 711 aaPredicted RBP10.55□□□□□ -0.72
USP4-202ENST00000351842 RIOX1Q9H6W3 641 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 HOXC10Q9NYD6 342 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 AGTPBP1Q9UPW5 1226 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 ATAD5Q96QE3 1844 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 CXCL11O14625 94 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 VEGFBP49765 207 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 BARHL2Q9NY43 387 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 TLL2Q9Y6L7 1015 aa10.55□□□□□ -0.72
USP4-202ENST00000351842 WNT7AO00755 349 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 PRPF40AO75400 957 aaKnown RBP10.54□□□□□ -0.72
USP4-202ENST00000351842 ERCC3P19447 782 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 OSBPP22059 807 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 ZNF76P36508 570 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 NUCB2P80303 420 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 BLIDQ8IZY5 108 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 LZTS2Q9BRK4 669 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 C6orf50Q9HD87 102 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 SPDYE3A6NKU9 549 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 MMP1P03956 469 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 DSG3P32926 999 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 FKBP1BP68106 108 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 CNTN2Q02246 1040 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 BAATQ14032 418 aaPredicted RBP10.54□□□□□ -0.72
USP4-202ENST00000351842 MAP3K11Q16584 847 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 FAM160B2Q86V87 743 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 DOCK3Q8IZD9 2030 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 DDX39AO00148 427 aaKnown RBP10.54□□□□□ -0.72
USP4-202ENST00000351842 CUL5Q93034 780 aa10.54□□□□□ -0.72
USP4-202ENST00000351842 RBAK-RBAKDNI3L0D1 243 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 CDC25AP30304 524 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 NOVP48745 357 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 RPS6P62753 249 aaKnown RBP10.53□□□□□ -0.72
USP4-202ENST00000351842 CRHR2Q13324 411 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 PPP2R5BQ15173 497 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 GPAT2Q6NUI2 795 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 POTEEQ6S8J3 1075 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 CCDC148Q8NFR7 591 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 USP28Q96RU2 1077 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 TEX13BQ9BXU2 312 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 SLC38A10Q9HBR0 1119 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 CCNT1O60563 726 aaKnown RBP10.53□□□□□ -0.72
USP4-202ENST00000351842 PTGS1P23219 599 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 ME1P48163 572 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 CYP2W1Q8TAV3 490 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 TBCKQ8TEA7 893 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 RBPJLQ9UBG7 517 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 CLIC4Q9Y696 253 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 OTOFQ9HC10 1997 aa10.53□□□□□ -0.72
USP4-202ENST00000351842 GOLGA6L4A6NEF3 574 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 BRD1O95696 1058 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 STK38Q15208 465 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 PLIN2Q99541 437 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 MOV10L1Q9BXT6 1211 aaKnown RBP10.52□□□□□ -0.72
USP4-202ENST00000351842 SPATC1LQ9H0A9 340 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 ZNF214Q9UL59 606 aaPredicted RBP10.52□□□□□ -0.72
USP4-202ENST00000351842 KCNH4Q9UQ05 1017 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 PCDHB6Q9Y5E3 794 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 DOCK1Q14185 1865 aa10.52□□□□□ -0.72
USP4-202ENST00000351842 A0A087WWV3 80 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 GNA11P29992 359 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 MRPL12P52815 198 aaKnown RBP10.52□□□□□ -0.73
USP4-202ENST00000351842 RNF207Q6ZRF8 634 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 NOSTRINQ8IVI9 506 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 CCDC102AQ96A19 550 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 IVNS1ABPQ9Y6Y0 642 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 ZNF536O15090 1300 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 ABCB11O95342 1321 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 TESPA1A2RU30 521 aaPredicted RBP10.52□□□□□ -0.73
USP4-202ENST00000351842 TDP2O95551 362 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 SLC10A3P09131 477 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 PABPC4Q13310 644 aaKnown RBP eCLIP10.52□□□□□ -0.73
USP4-202ENST00000351842 PROCA1Q8NCQ7 364 aaPredicted RBP10.52□□□□□ -0.73
USP4-202ENST00000351842 RASSF8Q8NHQ8 419 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 CCDC12Q8WUD4 166 aaPredicted RBP10.52□□□□□ -0.73
USP4-202ENST00000351842 ARHGAP39Q9C0H5 1083 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 PNMA3Q9UL41 463 aa10.52□□□□□ -0.73
USP4-202ENST00000351842 PCDHA4Q9UN74 947 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms