RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 ATP1A3P13637 1013 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 BMP6P22004 513 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 KRT2P35908 639 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 CTDSPL2Q05D32 466 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 SBK1Q52WX2 424 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 FKBP1CQ5VVH2 108 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 TRIM65Q6PJ69 517 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 HHIPL2Q6UWX4 724 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 FAM83AQ86UY5 434 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 REXO1L1PQ8IX06 675 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 KRT222Q8N1A0 295 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.22□□□□□ -0.45
RTN3-201ENST00000338850 WDR66Q8TBY9 1149 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 ERCC4Q92889 916 aaPredicted RBP12.22□□□□□ -0.45
RTN3-201ENST00000338850 TNFRSF25Q93038 417 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 OPTNQ96CV9 577 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 PANX2Q96RD6 677 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 INTS13Q9NVM9 706 aa12.22□□□□□ -0.45
RTN3-201ENST00000338850 ROBO3Q96MS0 1386 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 A0A087WWV3 80 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 EFCAB8A8MWE9 144 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 MAP3K9P80192 1104 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 AKAP17AQ02040 695 aaKnown RBP12.21□□□□□ -0.45
RTN3-201ENST00000338850 VGLL4Q14135 290 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 CCDC178Q5BJE1 867 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 ARL6IP4Q66PJ3 421 aaKnown RBP12.21□□□□□ -0.45
RTN3-201ENST00000338850 FBXO46Q6PJ61 603 aaPredicted RBP12.21□□□□□ -0.45
RTN3-201ENST00000338850 POTEHQ6S545 545 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 IQCA1Q86XH1 822 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 RAB11FIP4Q86YS3 637 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 CNKSR2Q8WXI2 1034 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 MS4A4AQ96JQ5 239 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 CLIC6Q96NY7 704 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 ZSCAN10Q96SZ4 725 aaPredicted RBP12.21□□□□□ -0.45
RTN3-201ENST00000338850 PTPN18Q99952 460 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 FANCLQ9NW38 375 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 TMOD2Q9NZR1 351 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 LRP2BPQ9P2M1 347 aa12.21□□□□□ -0.45
RTN3-201ENST00000338850 CNTNAP5Q8WYK1 1306 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 PPFIA3O75145 1194 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 MYL1P05976 194 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 RXRAP19793 462 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 CYP7A1P22680 504 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 HOXA7P31268 230 aaPredicted RBP12.2□□□□□ -0.46
RTN3-201ENST00000338850 PBX1P40424 430 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 ATP2C1P98194 919 aaPredicted RBP12.2□□□□□ -0.46
RTN3-201ENST00000338850 SPAG1Q07617 926 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 TROAPQ12815 778 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 CRHR2Q13324 411 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 TRIM14Q14142 442 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 NR1I3Q14994 352 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 PKN1Q16512 942 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 KMT5BQ4FZB7 885 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 CDKAL1Q5VV42 579 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 SPATA1Q5VX52 437 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 TMTC3Q6ZXV5 915 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 CATIPQ7Z7H3 387 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 ANKS1AQ92625 1134 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 SH3GLB2Q9NR46 395 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 ATP8A2Q9NTI2 1148 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 ARGLU1Q9NWB6 273 aaPredicted RBP12.2□□□□□ -0.46
RTN3-201ENST00000338850 TRMT1Q9NXH9 659 aaKnown RBP12.2□□□□□ -0.46
RTN3-201ENST00000338850 RAI14Q9P0K7 980 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 NFE2L3Q9Y4A8 694 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 DAGLAQ9Y4D2 1042 aa12.2□□□□□ -0.46
RTN3-201ENST00000338850 CDK5RAP2Q96SN8 1893 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 SPDYE5A6NIY4 337 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 POLR2DO15514 142 aaKnown RBP12.19□□□□□ -0.46
RTN3-201ENST00000338850 TADA3O75528 432 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 PRDX5P30044 214 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 GUCY1A2P33402 732 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 PDE4BQ07343 736 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 CUL4BQ13620 913 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 DIXDC1Q155Q3 683 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 FBXO38Q6PIJ6 1188 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 SYT10Q6XYQ8 523 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 APTXQ7Z2E3 356 aaKnown RBP12.19□□□□□ -0.46
RTN3-201ENST00000338850 CERS3Q8IU89 383 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 ENAHQ8N8S7 591 aaPredicted RBP12.19□□□□□ -0.46
RTN3-201ENST00000338850 TC2NQ8N9U0 490 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 BRI3BPQ8WY22 251 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 ZNF592Q92610 1267 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 BAG1Q99933 345 aaPredicted RBP12.19□□□□□ -0.46
RTN3-201ENST00000338850 MYL10Q9BUA6 226 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 ARPP21Q9UBL0 812 aaPredicted RBP12.19□□□□□ -0.46
RTN3-201ENST00000338850 SERTAD1Q9UHV2 236 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 PPP2R2CQ9Y2T4 447 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 PCDHB6Q9Y5E3 794 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 CSADQ9Y600 493 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 SNCAIPQ9Y6H5 919 aa12.19□□□□□ -0.46
RTN3-201ENST00000338850 FOCADQ5VW36 1801 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 CCL15-CCL14A0A0B4J2E2 113 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 VWA3AA6NCI4 1184 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 PRKAB2O43741 272 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 LDHBP07195 334 aaKnown RBP12.18□□□□□ -0.46
RTN3-201ENST00000338850 CALML3P27482 149 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 DPYDQ12882 1025 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 BMS1Q14692 1282 aaKnown RBP12.18□□□□□ -0.46
RTN3-201ENST00000338850 ELF2Q15723 593 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 CCL15Q16663 113 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms