RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 TDP2O95551 362 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 ERCC5P28715 1186 aaPredicted RBP7.41□□□□□ -1.22
USP47-201ENST00000305481 SLC1A4P43007 532 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 UBASH3AP57075 661 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 KLRC3Q07444 240 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 PPP4R3BQ5MIZ7 849 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 PPP1R18Q6NYC8 613 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 ARMCX5Q6P1M9 558 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 DCAF4Q8WV16 495 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 IMPACTQ9P2X3 320 aa7.41□□□□□ -1.22
USP47-201ENST00000305481 NDUFB10O96000 172 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 STAT6P42226 847 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 DLGAP5Q15398 846 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 QRICH1Q2TAL8 776 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 SPDYE2Q495Y8 402 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 TMC6Q7Z403 805 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 GMCL1P1Q8NEA9 526 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 PYM1Q9BRP8 204 aaKnown RBP7.4□□□□□ -1.22
USP47-201ENST00000305481 MMTAG2Q9BU76 263 aaKnown RBP7.4□□□□□ -1.22
USP47-201ENST00000305481 TRIM34Q9BYJ4 488 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 DACH1Q9UI36 760 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 ZNRF3Q9ULT6 936 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 R3HCC1Q9Y3T6 440 aaKnown RBP7.4□□□□□ -1.22
USP47-201ENST00000305481 SHTN1A0MZ66 631 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 MYO1BO43795 1136 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 SERPINC1P01008 464 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 UBA7P41226 1012 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 TECP42680 631 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 SNAP25P60880 206 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 CXCL9Q07325 125 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 KIAA1755Q5JYT7 1200 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 APTXQ7Z2E3 356 aaKnown RBP7.4□□□□□ -1.22
USP47-201ENST00000305481 IGSF22Q8N9C0 903 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 FAM151AQ8WW52 585 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 CCDC34Q96HJ3 373 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 GMCL1Q96IK5 515 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 VPS33BQ9H267 617 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 KBTBD4Q9NVX7 518 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 PIM2Q9P1W9 311 aa7.4□□□□□ -1.22
USP47-201ENST00000305481 ATF5Q9Y2D1 282 aaPredicted RBP7.4□□□□□ -1.22
USP47-201ENST00000305481 TXLNAP40222 546 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 STX17P56962 302 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 ORC2Q13416 577 aaPredicted RBP7.4□□□□□ -1.23
USP47-201ENST00000305481 RBM26Q5T8P6 1007 aaKnown RBP7.4□□□□□ -1.23
USP47-201ENST00000305481 RRAGBQ5VZM2 374 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 FBXO41Q8TF61 875 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 ZBED3Q96IU2 234 aaPredicted RBP7.4□□□□□ -1.23
USP47-201ENST00000305481 AK8Q96MA6 479 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 P2RX7Q99572 595 aaKnown RBP7.4□□□□□ -1.23
USP47-201ENST00000305481 PSTPIP2Q9H939 334 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.4□□□□□ -1.23
USP47-201ENST00000305481 PGAP2Q9UHJ9 254 aa7.4□□□□□ -1.23
USP47-201ENST00000305481 USP17L15C9J2P7 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L13C9JLJ4 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L11C9JVI0 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L18D6R9N7 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L22D6RA61 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L17D6RBQ6 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L19D6RCP7 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L20D6RJB6 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 COBLO75128 1261 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 RPN1P04843 607 aaKnown RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 SKILP12757 684 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 PLCG1P19174 1290 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 TXKP42681 527 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 ECE1P42892 770 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 TNNI2P48788 182 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L24Q0WX57 530 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 CDC37Q16543 378 aaPredicted RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 CT47A1Q5JQC4 288 aaPredicted RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 KLHL10Q6JEL2 608 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP17L6PQ6QN14 398 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 CABP7Q86V35 215 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 OGFOD1Q8N543 542 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 MTMR14Q8NCE2 650 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 CUL5Q93034 780 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 HERC5Q9UII4 1024 aaKnown RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 ARFGEF1Q9Y6D6 1849 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 KLRC4O43908 158 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 MRPL12P52815 198 aaKnown RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 GSDMDP57764 484 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 TGFB2P61812 414 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 SPATA1Q5VX52 437 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 VSTM4Q8IW00 320 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 NIM1KQ8IY84 436 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 AGBL3Q8NEM8 1001 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 ACER1Q8TDN7 264 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 TMEM39BQ9GZU3 492 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 HDAC9Q9UKV0 1011 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 PCDHA1Q9Y5I3 950 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 USP27XA6NNY8 438 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 TAL1P17542 331 aaPredicted RBP7.39□□□□□ -1.23
USP47-201ENST00000305481 CALCRLQ16602 461 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 NBPF9Q3BBW0 867 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 CDKAL1Q5VV42 579 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 PPP4R3AQ6IN85 833 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 SPICE1Q8N0Z3 855 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 HAS1Q92839 578 aa7.39□□□□□ -1.23
USP47-201ENST00000305481 GJA10Q969M2 543 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms