RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 KCNJ14Q9UNX9 436 aa10.95□□□□□ -0.66
RFX3-201ENST00000302303 ZDHHC9Q9Y397 364 aa10.95□□□□□ -0.66
RFX3-201ENST00000302303 PCDHA1Q9Y5I3 950 aa10.95□□□□□ -0.66
RFX3-201ENST00000302303 NFIBO00712 420 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 MEIS2O14770 477 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 EDIL3O43854 480 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 GCLCP48506 637 aaPredicted RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 FAM110CQ1W6H9 321 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 USH1GQ495M9 461 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 KRT40Q6A162 431 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 SNRNP48Q6IEG0 339 aaKnown RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.94□□□□□ -0.66
RFX3-201ENST00000302303 HEATR3Q7Z4Q2 680 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 OXER1Q8TDS5 423 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 TNFRSF25Q93038 417 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 PAGR1Q9BTK6 254 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 TEX13BQ9BXU2 312 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 SH3GLB2Q9NR46 395 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 CCPG1Q9ULG6 757 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 MYH6P13533 1939 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 ESYT2A0FGR8 921 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 TBC1D8O95759 1140 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 CLK2P49760 499 aaKnown RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 GUCY1B3Q02153 619 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 NOM1Q5C9Z4 860 aaKnown RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 SMCR8Q8TEV9 937 aaPredicted RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 GTF3C2Q8WUA4 911 aaPredicted RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 EFCC1Q9HA90 598 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 RTN4Q9NQC3 1192 aaKnown RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 COL20A1Q9P218 1284 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 SEC63Q9UGP8 760 aaKnown RBP10.94□□□□□ -0.66
RFX3-201ENST00000302303 MTMR6Q9Y217 621 aa10.94□□□□□ -0.66
RFX3-201ENST00000302303 SMCO2A6NFE2 343 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 KIF28PB7ZC32 967 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 hCG_1984214I3L0E3 225 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 TRPA1O75762 1119 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 ALDH1A1P00352 501 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 MMP1P03956 469 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 ALAS1P13196 640 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 ERCC3P19447 782 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 FOSBP53539 338 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 AKAP17AQ02040 695 aaKnown RBP10.93□□□□□ -0.66
RFX3-201ENST00000302303 EARS2Q5JPH6 523 aaKnown RBP10.93□□□□□ -0.66
RFX3-201ENST00000302303 LARP1BQ659C4 914 aaKnown RBP10.93□□□□□ -0.66
RFX3-201ENST00000302303 ZNF713Q8N859 430 aaPredicted RBP10.93□□□□□ -0.66
RFX3-201ENST00000302303 RGS22Q8NE09 1264 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 GPRC5AQ8NFJ5 357 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 TRERF1Q96PN7 1200 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 PURBQ96QR8 312 aaKnown RBP10.93□□□□□ -0.66
RFX3-201ENST00000302303 ZFYVE28Q9HCC9 887 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 CWC22Q9HCG8 908 aaKnown RBP10.93□□□□□ -0.66
RFX3-201ENST00000302303 RIC8AQ9NPQ8 531 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 ABCB11O95342 1321 aa10.93□□□□□ -0.66
RFX3-201ENST00000302303 BTBD18B2RXH4 712 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 HSD17B4P51659 736 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 NAPAP54920 295 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 PLS1Q14651 629 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 TKFCQ3LXA3 575 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 PPP1R18Q6NYC8 613 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 USP17L6PQ6QN14 398 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 FAM177A1Q8N128 213 aaPredicted RBP10.92□□□□□ -0.66
RFX3-201ENST00000302303 FAM184AQ8NB25 1140 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 DAGLBQ8NCG7 672 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 SHCBP1Q8NEM2 672 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 WASF1Q92558 559 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 C8orf76Q96K31 380 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 FGD4Q96M96 766 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 A1CFQ9NQ94 594 aaKnown RBP10.92□□□□□ -0.66
RFX3-201ENST00000302303 HOMER2Q9NSB8 354 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 RNF146Q9NTX7 359 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 WBP1LQ9NX94 342 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 MRPL11Q9Y3B7 192 aaKnown RBP10.92□□□□□ -0.66
RFX3-201ENST00000302303 ASTN1O14525 1302 aa10.92□□□□□ -0.66
RFX3-201ENST00000302303 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 PIK3CDO00329 1044 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 SLC25A27O95847 323 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 U2AF2P26368 475 aaKnown RBP eCLIP10.91□□□□□ -0.663e-6■■□□□ 13.6
RFX3-201ENST00000302303 NR5A1Q13285 461 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 UBE2SQ16763 222 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 JMYQ8N9B5 988 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 CHST13Q8NET6 341 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 RASGRP4Q8TDF6 673 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 CRYGNQ8WXF5 182 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 PSTPIP2Q9H939 334 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 TMEM260Q9NX78 707 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 CYP39A1Q9NYL5 469 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 PCDHA6Q9UN73 950 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 PCDHA4Q9UN74 947 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 PCDHA8Q9Y5H6 950 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 HTTP42858 3142 aa10.91□□□□□ -0.66
RFX3-201ENST00000302303 FAM205CA6NFA0 338 aa10.9□□□□□ -0.66
RFX3-201ENST00000302303 STX6O43752 255 aa10.9□□□□□ -0.66
RFX3-201ENST00000302303 BRD1O95696 1058 aa10.9□□□□□ -0.66
RFX3-201ENST00000302303 HSP90AA1P07900 732 aaKnown RBP10.9□□□□□ -0.66
RFX3-201ENST00000302303 HOXA13P31271 388 aaPredicted RBP10.9□□□□□ -0.66
RFX3-201ENST00000302303 NLRP5P59047 1200 aa10.9□□□□□ -0.66
RFX3-201ENST00000302303 RPS6P62753 249 aaKnown RBP10.9□□□□□ -0.66
RFX3-201ENST00000302303 BAATQ14032 418 aaPredicted RBP10.9□□□□□ -0.66
RFX3-201ENST00000302303 SLC30A10Q6XR72 485 aa10.9□□□□□ -0.66
RFX3-201ENST00000302303 NCAPG2Q86XI2 1143 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms