RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 GTF2A1P52655 376 aaPredicted RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 ARID5AQ03989 594 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 TDRD12Q587J7 1177 aaKnown RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 CT47A1Q5JQC4 288 aaPredicted RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 C2CD5Q86YS7 1000 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 ADSSL1Q8N142 457 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 TNFRSF25Q93038 417 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 NHEJ1Q9H9Q4 299 aaPredicted RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 GLI3P10071 1580 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 LGALS16A8MUM7 142 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 ACTN2P35609 894 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 TRAPPC10P48553 1259 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 RNASE9P60153 205 aaKnown RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 TXNRD1Q16881 649 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 IRF2BP1Q8IU81 584 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 BSDC1Q9NW68 430 aaPredicted RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 LCMT1Q9UIC8 334 aa14.13□□□□□ -0.15
LIG1-201ENST00000263274 REXO2Q9Y3B8 237 aaKnown RBP14.13□□□□□ -0.15
LIG1-201ENST00000263274 KLRF2D3W0D1 207 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 PLEKP08567 350 aaPredicted RBP14.12□□□□□ -0.15
LIG1-201ENST00000263274 DNM2P50570 870 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 STK4Q13043 487 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 FOXR1Q6PIV2 292 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 USP17L2Q6R6M4 530 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 SLC51AQ86UW1 340 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 SETDB2Q96T68 719 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 LRWD1Q9UFC0 647 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 PKD1L3Q7Z443 1732 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 MYH8P13535 1937 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 FAM170AA1A519 330 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 LDHBP07195 334 aaKnown RBP14.12□□□□□ -0.15
LIG1-201ENST00000263274 TUBB2AQ13885 445 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 CACNA2D4Q7Z3S7 1137 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 TUBB2BQ9BVA1 445 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 ATP8A2Q9NTI2 1148 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 SMARCAL1Q9NZC9 954 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 ITIH6Q6UXX5 1313 aa14.12□□□□□ -0.15
LIG1-201ENST00000263274 SMCO2A6NFE2 343 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 MAP2K7O14733 419 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 SLC7A5Q01650 507 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 MAP9Q49MG5 647 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 ANKRD40Q6AI12 368 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 SH3RF3Q8TEJ3 882 aaPredicted RBP14.11□□□□□ -0.15
LIG1-201ENST00000263274 ARPP21Q9UBL0 812 aaPredicted RBP14.11□□□□□ -0.15
LIG1-201ENST00000263274 SEC63Q9UGP8 760 aaKnown RBP14.11□□□□□ -0.15
LIG1-201ENST00000263274 DCCP43146 1447 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 RNF40O75150 1001 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 HERVK_113P62684 666 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 LRRC41Q15345 812 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 CALML4Q96GE6 196 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 TBC1D7Q9P0N9 293 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 RCCD1A6NED2 376 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 TBC1D9BQ66K14 1250 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 TTC19Q6DKK2 380 aaPredicted RBP14.11□□□□□ -0.15
LIG1-201ENST00000263274 MSANTD4Q8NCY6 345 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 NLRC4Q9NPP4 1024 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 PCDHA6Q9UN73 950 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 PCDHA8Q9Y5H6 950 aa14.11□□□□□ -0.15
LIG1-201ENST00000263274 USO1O60763 962 aaKnown RBP14.1□□□□□ -0.15
LIG1-201ENST00000263274 NAALADL2Q58DX5 795 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 ARL6IP4Q66PJ3 421 aaKnown RBP14.1□□□□□ -0.15
LIG1-201ENST00000263274 RCSD1Q6JBY9 416 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 RRAGAQ7L523 313 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 GPATCH11Q8N954 259 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 GOLGA5Q8TBA6 731 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 P2RX5Q93086 422 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 MLXIPQ9HAP2 919 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 BAZ2AQ9UIF9 1905 aaKnown RBP14.1□□□□□ -0.15
LIG1-201ENST00000263274 LRRC10BA6NIK2 292 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 BUB1O43683 1085 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 SND1Q7KZF4 910 aaKnown RBP eCLIP14.1□□□□□ -0.15
LIG1-201ENST00000263274 IL17RBQ9NRM6 502 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 MYO1AQ9UBC5 1043 aa14.1□□□□□ -0.15
LIG1-201ENST00000263274 MYO1CO00159 1063 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 MOCS3O95396 460 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 EEF1GP26641 437 aaKnown RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 GNAQP50148 359 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 WDR59Q6PJI9 974 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 EHD2Q9NZN4 543 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 RAB21Q9UL25 225 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 NKRFO15226 690 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIG1-201ENST00000263274 OR52Z1P0C646 297 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 PTPROQ16827 1216 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 RUFY1Q96T51 708 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 IFIH1Q9BYX4 1025 aaKnown RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 KANSL2Q9H9L4 492 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 CAPN11Q9UMQ6 739 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIG1-201ENST00000263274 ZNF804BA4D1E1 1349 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 FRMPD2Q68DX3 1309 aaPredicted RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 ORC4O43929 436 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 USP14P54578 494 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 CKAP4Q07065 602 aaKnown RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 NONOQ15233 471 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIG1-201ENST00000263274 FAM98CQ17RN3 349 aaKnown RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 MARCH10Q8NA82 808 aaPredicted RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 AFAP1L1Q8TED9 768 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 HNRNPLLQ8WVV9 542 aaKnown RBP14.09□□□□□ -0.15
LIG1-201ENST00000263274 TMEM47Q9BQJ4 181 aa14.09□□□□□ -0.15
LIG1-201ENST00000263274 POLD4Q9HCU8 107 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms