RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CABP7Q86V35 215 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 MKL1Q969V6 931 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 CTAGE1Q96RT6 745 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 RIC8AQ9NPQ8 531 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 USP27XA6NNY8 438 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 ZBTB5O15062 677 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 GTF2F1P35269 517 aaKnown RBP eCLIP14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 SEMA3FQ13275 785 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 NAALADL2Q58DX5 795 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 CDKAL1Q5VV42 579 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 SPECC1LQ69YQ0 1117 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 TATDN1Q6P1N9 297 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 KCTD1Q719H9 257 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 DCAF4Q8WV16 495 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 CUL5Q93034 780 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 RWDD2AQ9UIY3 292 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 PAXBP1Q9Y5B6 917 aa14.59□□□□□ -0.07
SPTLC1-201ENST00000262554 A0A1B0GTH6 734 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 FAM196BA6NMK8 535 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 C21orf2O43822 256 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 ENTPD3O75355 529 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 EEF2P13639 858 aaKnown RBP14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 SLC16A2P36021 539 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 MRPL12P52815 198 aaKnown RBP14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 PAK1Q13153 545 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 NR1I3Q14994 352 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 CEP135Q66GS9 1140 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 TMEM179Q6ZVK1 233 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 SH3BP5LQ7L8J4 393 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 MTMR8Q96EF0 704 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 TDRD3Q9H7E2 651 aaKnown RBP14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 KBTBD4Q9NVX7 518 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 TRMT1Q9NXH9 659 aaKnown RBP14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 ARFGEF1Q9Y6D6 1849 aa14.58□□□□□ -0.08
SPTLC1-201ENST00000262554 PSDA5PKW4 1024 aaPredicted RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 USP17L10C9JJH3 530 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 KIF2AO00139 706 aaPredicted RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 CCP110O43303 1012 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 RAD21O60216 631 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 SLURP2P0DP57 97 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 TECP42680 631 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 SLC1A4P43007 532 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 TBX2Q13207 712 aaPredicted RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 KCNB1Q14721 858 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 CALCRLQ16602 461 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 TMEM266Q2M3C6 531 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 FILIP1LQ4L180 1135 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 NYAP1Q6ZVC0 841 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 PLIN2Q99541 437 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 PPP1R11O60927 126 aaPredicted RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 COL2A1P02458 1487 aaPredicted RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 PLCG1P19174 1290 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 ICA1Q05084 483 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 ABCB5Q2M3G0 1257 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 ATRNL1Q5VV63 1379 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 E4F1Q66K89 784 aaPredicted RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 SLFN13Q68D06 897 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 TTLL6Q8N841 843 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 IGSF22Q8N9C0 903 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 NELFBQ8WX92 580 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 CCDC47Q96A33 483 aaKnown RBP14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 CALML4Q96GE6 196 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 RAB34Q9BZG1 259 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 GLT8D2Q9H1C3 349 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 TMX1Q9H3N1 280 aa14.57□□□□□ -0.08
SPTLC1-201ENST00000262554 YDJCA8MPS7 323 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 RIOK3O14730 519 aaKnown RBP14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 TXKP42681 527 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 TNNI2P48788 182 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 SEPT2Q15019 361 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 CCDC93Q567U6 631 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 RTKN2Q8IZC4 609 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 ANKRD20A12PQ8NF67 263 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 MTMR9Q96QG7 549 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 PSTPIP2Q9H939 334 aa14.56□□□□□ -0.08
SPTLC1-201ENST00000262554 MYH7BA7E2Y1 1941 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 PRCPP42785 496 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 CLK2P49760 499 aaKnown RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 FXR2P51116 673 aaKnown RBP eCLIP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 AMPD3Q01432 767 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 SPAG1Q07617 926 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 STIM1Q13586 685 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 PTPN21Q16825 1174 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 KMT5BQ4FZB7 885 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 POTEAQ6S8J7 498 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 APTXQ7Z2E3 356 aaKnown RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 TMOD2Q9NZR1 351 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 ADD3Q9UEY8 706 aaKnown RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 GDAQ9Y2T3 454 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 RHOBTB3O94955 611 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 TDP2O95551 362 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 UBE2SQ16763 222 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 SHROOM1Q2M3G4 852 aaPredicted RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 RBM26Q5T8P6 1007 aaKnown RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 PPP4R3AQ6IN85 833 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 FCHSD1Q86WN1 690 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 ZNF592Q92610 1267 aa14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 PRMT6Q96LA8 375 aaPredicted RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 NAP1L4Q99733 375 aaKnown RBP14.55□□□□□ -0.08
SPTLC1-201ENST00000262554 GTPBP4Q9BZE4 634 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms