RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 CASP8Q14790 479 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 CRY2Q49AN0 593 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 ZNF658Q5TYW1 1059 aaPredicted RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 USP17L1Q7RTZ2 530 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 SLC44A5Q8NCS7 719 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 RIN2Q8WYP3 895 aaPredicted RBP11.28□□□□□ -0.6
LIG3-201ENST00000262327 MMS19Q96T76 1030 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 MINPP1Q9UNW1 487 aa11.28□□□□□ -0.6
LIG3-201ENST00000262327 RCCD1A6NED2 376 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 FAM193AP78312 1265 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 NAALADL2Q58DX5 795 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 CCDC122Q5T0U0 273 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 HEATR3Q7Z4Q2 680 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 ZNF622Q969S3 477 aaKnown RBP eCLIP11.27□□□□□ -0.6
LIG3-201ENST00000262327 NSUN4Q96CB9 384 aaKnown RBP11.27□□□□□ -0.6
LIG3-201ENST00000262327 DRC1Q96MC2 740 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 ANKRD2Q9GZV1 360 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 TNRC6CQ9HCJ0 1690 aaKnown RBP11.27□□□□□ -0.6
LIG3-201ENST00000262327 NRXN2Q9P2S2 1712 aa11.27□□□□□ -0.6
LIG3-201ENST00000262327 MACROD2A1Z1Q3 448 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 TFAP4Q01664 338 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 UBE4AQ14139 1066 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 FKBP15Q5T1M5 1219 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 TXNRD3Q86VQ6 643 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 BLIDQ8IZY5 108 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 LUC7L2Q9Y383 392 aaKnown RBP11.27□□□□□ -0.61
LIG3-201ENST00000262327 ERLIN1O75477 346 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 BMP15O95972 392 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 NOP2P46087 812 aaKnown RBP11.27□□□□□ -0.61
LIG3-201ENST00000262327 GTF2A1P52655 376 aaPredicted RBP11.27□□□□□ -0.61
LIG3-201ENST00000262327 RCAN1P53805 252 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 HERVK_113P62684 666 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 GRAPQ13588 217 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 PFKFB3Q16875 520 aaPredicted RBP11.27□□□□□ -0.61
LIG3-201ENST00000262327 C10orf67Q8IYJ2 551 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 MB21D1Q8N884 522 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 MSANTD4Q8NCY6 345 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 GRAPLQ8TC17 118 aaPredicted RBP11.27□□□□□ -0.61
LIG3-201ENST00000262327 SMCR8Q8TEV9 937 aaPredicted RBP11.27□□□□□ -0.61
LIG3-201ENST00000262327 PSMB7Q99436 277 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 LACRTQ9GZZ8 138 aa11.27□□□□□ -0.61
LIG3-201ENST00000262327 CCDC194A0A1B0GVG4 234 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 SEMA3EO15041 775 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 DDAH1O94760 285 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 UBA7P41226 1012 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 CCDC178Q5BJE1 867 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 RCSD1Q6JBY9 416 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 WDR59Q6PJI9 974 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.26□□□□□ -0.61
LIG3-201ENST00000262327 KIAA1328Q86T90 577 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 C4orf32Q8N8J7 132 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 RBM17Q96I25 401 aaKnown RBP11.26□□□□□ -0.61
LIG3-201ENST00000262327 BRIP1Q9BX63 1249 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 DISC1Q9NRI5 854 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 RAB21Q9UL25 225 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 LRRC10BA6NIK2 292 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 CALM1P0DP23 149 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 CALM2P0DP24 149 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 CALM3P0DP25 149 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 TRIM21P19474 475 aaKnown RBP11.26□□□□□ -0.61
LIG3-201ENST00000262327 HOXA10P31260 410 aaPredicted RBP11.26□□□□□ -0.61
LIG3-201ENST00000262327 PPP2R5BQ15173 497 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 DTHD1Q6ZMT9 781 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 KRT26Q7Z3Y9 468 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 OR8K1Q8NGG5 319 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 RPGRQ92834 1020 aaKnown RBP11.26□□□□□ -0.61
LIG3-201ENST00000262327 CCDC51Q96ER9 411 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 MTA3Q9BTC8 594 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 KAT14Q9H8E8 782 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 VAT1LQ9HCJ6 419 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 STX8Q9UNK0 236 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIG3-201ENST00000262327 TIAM2Q8IVF5 1701 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 ZNF804BA4D1E1 1349 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 ITIH6Q6UXX5 1313 aa11.26□□□□□ -0.61
LIG3-201ENST00000262327 PLEKP08567 350 aaPredicted RBP11.25□□□□□ -0.61
LIG3-201ENST00000262327 FCER1AP12319 257 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 AMPD2Q01433 879 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 SLC35G1Q2M3R5 365 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 ADSSL1Q8N142 457 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 PNMA1Q8ND90 353 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 GPR101Q96P66 508 aaPredicted RBP11.25□□□□□ -0.61
LIG3-201ENST00000262327 UIMC1Q96RL1 719 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 IL17RBQ9NRM6 502 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 ATP2B2Q01814 1243 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 SPAG1Q07617 926 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 TSR1Q2NL82 804 aaKnown RBP11.25□□□□□ -0.61
LIG3-201ENST00000262327 CRAMP1Q96RY5 1269 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 CRNKL1Q9BZJ0 848 aaKnown RBP11.25□□□□□ -0.61
LIG3-201ENST00000262327 RABEP2Q9H5N1 569 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 SAP30BPQ9UHR5 308 aaKnown RBP11.25□□□□□ -0.61
LIG3-201ENST00000262327 MYH13Q9UKX3 1938 aa11.25□□□□□ -0.61
LIG3-201ENST00000262327 MATR3P43243 847 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIG3-201ENST00000262327 DIXDC1Q155Q3 683 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 WHAMMP3Q1A5X7 153 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIG3-201ENST00000262327 CSGALNACT2Q8N6G5 542 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 CAGE1Q8TC20 777 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 SMARCAL1Q9NZC9 954 aa11.24□□□□□ -0.61
LIG3-201ENST00000262327 MYBL2P10244 700 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms