RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	LEU9	Q12166	604 aa	Known RBP	3	□□□□□ -1.93
UBX4	YMR067C	MTF1	P14908	341 aa	Known RBP	2.99	□□□□□ -1.93
UBX4	YMR067C	PWP1	P21304	576 aa	Known RBP	2.99	□□□□□ -1.93
UBX4	YMR067C	ADH7	P25377	361 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	ECM15	P35195	104 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	ALY1	P36117	915 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	ANS1	P38832	159 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	ELO1	P39540	310 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	YJL213W	P40896	331 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	BNA1	P47096	177 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	DIA3	P52290	468 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	BOR1	P53838	576 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	SAM50	P53969	484 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	RBA50	Q04418	439 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	SET6	Q12529	373 aa		2.99	□□□□□ -1.93
UBX4	YMR067C	GDH1	P07262	454 aa	Known RBP	2.98	□□□□□ -1.93
UBX4	YMR067C	SEC62	P21825	274 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	VMA16	P23968	213 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	NDC1	P32500	655 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	CBF2	P32504	956 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	ROT2	P38138	954 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	RPH1	P39956	796 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	YER010C	P40011	234 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	KAP123	P40069	1113 aa	Known RBP	2.98	□□□□□ -1.93
UBX4	YMR067C	BUR6	P40096	142 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	RPS10B	P46784	105 aa	Known RBP	2.98	□□□□□ -1.93
UBX4	YMR067C	COS10	P52924	374 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	INN1	P53901	409 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	RHO4	Q00246	291 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	GTR1	Q00582	310 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	SDH5	Q08230	162 aa		2.98	□□□□□ -1.93
UBX4	YMR067C	MRS6	P32864	603 aa	Known RBP	2.97	□□□□□ -1.93
UBX4	YMR067C	SLC1	P33333	303 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	YKL100C	P34248	587 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	AGP2	P38090	596 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	KTR3	P38130	404 aa	Predicted RBP	2.97	□□□□□ -1.93
UBX4	YMR067C	MKT1	P40850	830 aa	Known RBP	2.97	□□□□□ -1.93
UBX4	YMR067C	RPS7B	P48164	190 aa	Known RBP	2.97	□□□□□ -1.93
UBX4	YMR067C	YGL242C	P53066	181 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	YGR021W	P53212	290 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	DIC1	Q06143	298 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	RTT109	Q07794	436 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	RPS10A	Q08745	105 aa	Predicted RBP	2.97	□□□□□ -1.93
UBX4	YMR067C	YLL056C	Q12177	298 aa		2.97	□□□□□ -1.93
UBX4	YMR067C	PDH1	Q12428	516 aa	Known RBP	2.97	□□□□□ -1.93
UBX4	YMR067C	BUD5	P25300	642 aa	Predicted RBP	2.96	□□□□□ -1.94
UBX4	YMR067C	RPS2	P25443	254 aa	Known RBP	2.96	□□□□□ -1.94
UBX4	YMR067C	PTR2	P32901	601 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	SIP2	P34164	415 aa	Known RBP	2.96	□□□□□ -1.94
UBX4	YMR067C	CSM2	P40465	213 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	RPR2	P40571	144 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	YPI1	P43587	155 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	RSM23	Q01163	450 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	ECM30	Q06673	1274 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	GRC3	Q07845	632 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	YOL087C	Q99247	1116 aa		2.96	□□□□□ -1.94
UBX4	YMR067C	REV1	P12689	985 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	MCK1	P21965	375 aa	Known RBP	2.95	□□□□□ -1.94
UBX4	YMR067C	SPC110	P32380	944 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	IES5	P40060	125 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	FMP10	P40098	244 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	TPM2	P40414	161 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	YFR016C	P43597	1233 aa	Known RBP	2.95	□□□□□ -1.94
UBX4	YMR067C	ALT2	P52892	507 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	YGR127W	P53275	312 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	YPL014W	Q02606	381 aa		2.95	□□□□□ -1.94
UBX4	YMR067C	RIX7	Q07844	837 aa	Known RBP	2.95	□□□□□ -1.94
UBX4	YMR067C	AGA1	P32323	725 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	SAC6	P32599	642 aa	Known RBP	2.94	□□□□□ -1.94
UBX4	YMR067C	IDP2	P41939	412 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	SPG5	P42933	373 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	FAR3	P46671	204 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	ARC1	P46672	376 aa	Known RBP	2.94	□□□□□ -1.94
UBX4	YMR067C	SHE10	P53075	577 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	SMM1	P53720	384 aa	Known RBP	2.94	□□□□□ -1.94
UBX4	YMR067C	YMR087W	Q04299	284 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	VMS1	Q04311	632 aa	Known RBP	2.94	□□□□□ -1.94
UBX4	YMR067C	GLO2	Q05584	274 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	TEN1	Q07921	160 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	TCO89	Q08921	799 aa		2.94	□□□□□ -1.94
UBX4	YMR067C	CAR1	P00812	333 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	RPL20A	P0CX23	172 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	RPL20B	P0CX24	172 aa	Predicted RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	PEP5	P12868	1029 aa		2.93	□□□□□ -1.94
UBX4	YMR067C	ATR1	P13090	542 aa		2.93	□□□□□ -1.94
UBX4	YMR067C	AMD1	P15274	810 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	SUI2	P20459	304 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	MTR2	P34232	184 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	SWH1	P35845	1188 aa		2.93	□□□□□ -1.94
UBX4	YMR067C	YKL023W	P36103	277 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	TIF5	P38431	405 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	EFM6	P53970	246 aa		2.93	□□□□□ -1.94
UBX4	YMR067C	DPB4	Q04603	196 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	SNO4	Q04902	237 aa		2.93	□□□□□ -1.94
UBX4	YMR067C	HSP33	Q08914	237 aa	Known RBP	2.93	□□□□□ -1.94
UBX4	YMR067C	HSP32	Q08992	237 aa		2.93	□□□□□ -1.94
UBX4	YMR067C	APE1	P14904	514 aa		2.92	□□□□□ -1.94
UBX4	YMR067C	SAN1	P22470	610 aa		2.92	□□□□□ -1.94
UBX4	YMR067C	PRE8	P23639	250 aa		2.92	□□□□□ -1.94
UBX4	YMR067C	PUP3	P25451	205 aa	Known RBP	2.92	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 57.4 ms