RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZNF697Q5TEC3 545 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 KCTD1Q719H9 257 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 ARMCX2Q7L311 632 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 ZNF467Q7Z7K2 595 aaPredicted RBP19.18■□□□□ 0.66
CLN3-246ENST00000636228 CCDC144CPQ8IYA2 1237 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 TSEN34Q9BSV6 310 aaKnown RBP19.18■□□□□ 0.66
CLN3-246ENST00000636228 IL17RBQ9NRM6 502 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 FBXO40Q9UH90 709 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 SYNPO2Q9UMS6 1093 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 STX8Q9UNK0 236 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLN3-246ENST00000636228 DDX49Q9Y6V7 483 aaKnown RBP19.18■□□□□ 0.66
CLN3-246ENST00000636228 PLIN4Q96Q06 1357 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 ZNFX1Q9P2E3 1918 aaKnown RBP19.17■□□□□ 0.66
CLN3-246ENST00000636228 LTBP2Q14767 1821 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 TSPY2A6NKD2 308 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 KIAA0355O15063 1070 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 DUSP11O75319 330 aaKnown RBP19.17■□□□□ 0.66
CLN3-246ENST00000636228 STAT2P52630 851 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 OAZ1P54368 228 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 CCDC174Q6PII3 467 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 NUP133Q8WUM0 1156 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 STAG1Q8WVM7 1258 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 CRBNQ96SW2 442 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 ZNF536O15090 1300 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 SALL3Q9BXA9 1300 aa19.17■□□□□ 0.66
CLN3-246ENST00000636228 MOXD2PA6NHM9 499 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 DCDC2CA8MYV0 355 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 PTGS1P23219 599 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 RRP1P56182 461 aaKnown RBP19.16■□□□□ 0.66
CLN3-246ENST00000636228 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.16■□□□□ 0.66
CLN3-246ENST00000636228 CHURC1Q8WUH1 139 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 VTI1AQ96AJ9 217 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 GMCL1Q96IK5 515 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 CDX2Q99626 313 aaPredicted RBP19.16■□□□□ 0.66
CLN3-246ENST00000636228 SEMA6BQ9H3T3 888 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 ABHD16BQ9H3Z7 469 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 ACAD9Q9H845 621 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 RNF146Q9NTX7 359 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 SMCHD1A6NHR9 2005 aa19.16■□□□□ 0.66
CLN3-246ENST00000636228 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.15■□□□□ 0.66
CLN3-246ENST00000636228 SOWAHBA6NEL2 793 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 RANBP6O60518 1105 aaKnown RBP19.15■□□□□ 0.66
CLN3-246ENST00000636228 ASGR1P07306 291 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 ALAS1P13196 640 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 ANKRD33Q7Z3H0 272 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 FAM160B2Q86V87 743 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 RNPC3Q96LT9 517 aaKnown RBP19.15■□□□□ 0.66
CLN3-246ENST00000636228 TRERF1Q96PN7 1200 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 KATNBL1Q9H079 304 aa19.15■□□□□ 0.66
CLN3-246ENST00000636228 A1CFQ9NQ94 594 aaKnown RBP19.15■□□□□ 0.66
CLN3-246ENST00000636228 GJA9P57773 515 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 BEX3Q00994 111 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 FPGSQ05932 587 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 MUM1L1Q5H9M0 696 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 GNASQ5JWF2 1037 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 RCSD1Q6JBY9 416 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 FAM133AQ8N9E0 248 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 GLT1D1Q96MS3 346 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 TOX2Q96NM4 488 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 TTYH1Q9H313 450 aaPredicted RBP19.14■□□□□ 0.65
CLN3-246ENST00000636228 ZBTB47Q9UFB7 747 aaPredicted RBP19.14■□□□□ 0.65
CLN3-246ENST00000636228 PRR12Q9ULL5 1215 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 PLXNA1Q9UIW2 1896 aa19.14■□□□□ 0.65
CLN3-246ENST00000636228 FDX1P10109 184 aa19.13■□□□□ 0.65
CLN3-246ENST00000636228 SMAD3P84022 425 aaKnown RBP19.13■□□□□ 0.65
CLN3-246ENST00000636228 NOL8Q76FK4 1167 aaKnown RBP19.13■□□□□ 0.65
CLN3-246ENST00000636228 FAM227BQ96M60 508 aa19.13■□□□□ 0.65
CLN3-246ENST00000636228 PURBQ96QR8 312 aaKnown RBP19.13■□□□□ 0.65
CLN3-246ENST00000636228 UPF3AQ9H1J1 476 aaKnown RBP19.13■□□□□ 0.65
CLN3-246ENST00000636228 SPC25Q9HBM1 224 aa19.13■□□□□ 0.65
CLN3-246ENST00000636228 LAMA2P24043 3122 aaKnown RBP19.13■□□□□ 0.65
CLN3-246ENST00000636228 ASTN1O14525 1302 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 CTAGE5O15320 804 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 CST5P28325 142 aaPredicted RBP19.12■□□□□ 0.65
CLN3-246ENST00000636228 SLC16A2P36021 539 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 CDK7P50613 346 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 PDE1AP54750 535 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 RRP12Q5JTH9 1297 aaKnown RBP19.12■□□□□ 0.65
CLN3-246ENST00000636228 TMEM63BQ5T3F8 832 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 TTBK2Q6IQ55 1244 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 EEPD1Q7L9B9 569 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 PCSK9Q8NBP7 692 aaKnown RBP19.12■□□□□ 0.65
CLN3-246ENST00000636228 MYLIPQ8WY64 445 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 EVI5LQ96CN4 794 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 TOMM22Q9NS69 142 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 ANAPC4Q9UJX5 808 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 TBX21Q9UL17 535 aa19.12■□□□□ 0.65
CLN3-246ENST00000636228 ELP1O95163 1332 aa19.11■□□□□ 0.65
CLN3-246ENST00000636228 A0A0D9SFI3 127 aa19.11■□□□□ 0.65
CLN3-246ENST00000636228 TIMP1P01033 207 aa19.11■□□□□ 0.65
CLN3-246ENST00000636228 TNFAIP2Q03169 654 aa19.11■□□□□ 0.65
CLN3-246ENST00000636228 CCDC96Q2M329 555 aa19.11■□□□□ 0.65
CLN3-246ENST00000636228 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLN3-246ENST00000636228 PDGFCQ9NRA1 345 aa19.11■□□□□ 0.65
CLN3-246ENST00000636228 A0A0C4DFX4 3053 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 MYH4Q9Y623 1939 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 ARVCFO00192 962 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 PLA2G6O60733 806 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 FGAP02671 866 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms