RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SAMD1Q6SPF0 538 aaPredicted RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 GADL1Q6ZQY3 521 aa17.77■□□□□ 0.44
UPF1-206ENST00000598471 FASTKD5Q7L8L6 764 aaKnown RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 FBXO11Q86XK2 927 aa17.77■□□□□ 0.44
UPF1-206ENST00000598471 DIS3L2Q8IYB7 885 aaKnown RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 RANBP17Q9H2T7 1088 aaKnown RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 FOXP1Q9H334 677 aaPredicted RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 C6orf50Q9HD87 102 aa17.77■□□□□ 0.44
UPF1-206ENST00000598471 PNMA2Q9UL42 364 aa17.77■□□□□ 0.44
UPF1-206ENST00000598471 ABT1Q9ULW3 272 aaKnown RBP17.77■□□□□ 0.44
UPF1-206ENST00000598471 TLL2Q9Y6L7 1015 aa17.77■□□□□ 0.44
UPF1-206ENST00000598471 TRPM7Q96QT4 1865 aa17.77■□□□□ 0.43
UPF1-206ENST00000598471 ESYT2A0FGR8 921 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 ZBED4O75132 1171 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 GNA11P29992 359 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 HUNKP57058 714 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 PABPC4Q13310 644 aaKnown RBP eCLIP17.76■□□□□ 0.43
UPF1-206ENST00000598471 DGKZQ13574 1117 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 SAPCD2Q86UD0 394 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 BICD2Q8TD16 824 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 WNK4Q96J92 1243 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 GLT8D2Q9H1C3 349 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 FBXO28Q9NVF7 368 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 PPP1R9AQ9ULJ8 1098 aa17.76■□□□□ 0.43
UPF1-206ENST00000598471 MYPNQ86TC9 1320 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 BAZ2BQ9UIF8 2168 aaKnown RBP17.75■□□□□ 0.43
UPF1-206ENST00000598471 GOLGA6L22H0YM25 854 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 DEFB115Q30KQ5 88 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 CATSPERGQ6ZRH7 1159 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 CLEC17AQ6ZS10 378 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 DAGLBQ8NCG7 672 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 PCDHA4Q9UN74 947 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 PCDHA1Q9Y5I3 950 aa17.75■□□□□ 0.43
UPF1-206ENST00000598471 LOC285556D6RIA3 1793 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 ZBTB48P10074 688 aaPredicted RBP17.74■□□□□ 0.43
UPF1-206ENST00000598471 U2AF2P26368 475 aaKnown RBP eCLIP17.74■□□□□ 0.43
UPF1-206ENST00000598471 ADCY7P51828 1080 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 GTF2A2P52657 109 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 COG2Q14746 738 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 BLIDQ8IZY5 108 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 COA7Q96BR5 231 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 ZNF396Q96N95 335 aaPredicted RBP17.74■□□□□ 0.43
UPF1-206ENST00000598471 ZMYND12Q9H0C1 365 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 AGTPBP1Q9UPW5 1226 aa17.74■□□□□ 0.43
UPF1-206ENST00000598471 SMCO2A6NFE2 343 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 RASSF10A6NK89 507 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 BTBD18B2RXH4 712 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 PPP1R11O60927 126 aaPredicted RBP17.73■□□□□ 0.43
UPF1-206ENST00000598471 BAG4O95429 457 aaKnown RBP17.73■□□□□ 0.43
UPF1-206ENST00000598471 CETPP11597 493 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 DSG3P32926 999 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 SNAP25P60880 206 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 KRT85P78386 507 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 IRX3P78415 501 aaPredicted RBP17.73■□□□□ 0.43
UPF1-206ENST00000598471 FOXD4L6Q3SYB3 417 aaPredicted RBP17.73■□□□□ 0.43
UPF1-206ENST00000598471 ATL3Q6DD88 541 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 TYW1BQ6NUM6 668 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 CCDC174Q6PII3 467 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 FOXD4L3Q6VB84 417 aaPredicted RBP17.73■□□□□ 0.43
UPF1-206ENST00000598471 NOSTRINQ8IVI9 506 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 TEX2Q8IWB9 1127 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 CUL5Q93034 780 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 SHISA4Q96DD7 197 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 HOXC10Q9NYD6 342 aa17.73■□□□□ 0.43
UPF1-206ENST00000598471 PTPRFP10586 1907 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 KIF28PB7ZC32 967 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 ICAM1P05362 532 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 NCLP19338 710 aaKnown RBP17.72■□□□□ 0.43
UPF1-206ENST00000598471 HOXA7P31268 230 aaPredicted RBP17.72■□□□□ 0.43
UPF1-206ENST00000598471 GJA5P36382 358 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 VEGFBP49765 207 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 MRPL12P52815 198 aaKnown RBP17.72■□□□□ 0.43
UPF1-206ENST00000598471 CSPP1Q1MSJ5 1256 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 USH1GQ495M9 461 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 SPRYD7Q5W111 196 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 SLC38A10Q9HBR0 1119 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 MRPL11Q9Y3B7 192 aaKnown RBP17.72■□□□□ 0.43
UPF1-206ENST00000598471 ABCB11O95342 1321 aa17.72■□□□□ 0.43
UPF1-206ENST00000598471 OSBPP22059 807 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 TREML2Q5T2D2 321 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 MYSM1Q5VVJ2 828 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 MCTP2Q6DN12 878 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 CYP4F22Q6NT55 531 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 REXO1Q8N1G1 1221 aaKnown RBP17.71■□□□□ 0.43
UPF1-206ENST00000598471 ATG4CQ96DT6 458 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 RIC8AQ9NPQ8 531 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 CFAP45Q9UL16 551 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 PNMA3Q9UL41 463 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 CCPG1Q9ULG6 757 aa17.71■□□□□ 0.43
UPF1-206ENST00000598471 NOL7Q9UMY1 257 aaKnown RBP17.71■□□□□ 0.43
UPF1-206ENST00000598471 CCDC194A0A1B0GVG4 234 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 DDX11L8A8MPP1 907 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 VWA5AO00534 786 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 PTMSP20962 102 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 ZNF157P51786 506 aaPredicted RBP17.7■□□□□ 0.42
UPF1-206ENST00000598471 OAZ1P54368 228 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 DNM1Q05193 864 aaKnown RBP17.7■□□□□ 0.42
UPF1-206ENST00000598471 NR5A1Q13285 461 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 NPY5RQ15761 445 aa17.7■□□□□ 0.42
UPF1-206ENST00000598471 RILPL1Q5EBL4 403 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms