RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 VEGFAP15692 232 aaPredicted RBP16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 LRRC31Q6UY01 552 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 HPCAL4Q9UM19 191 aa16.66■□□□□ 0.26
SMARCA4-219ENST00000592604 A0A1B0GUL6 1792 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 COL1A1P02452 1464 aaPredicted RBP16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 KRT86O43790 486 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 RHOBTB3O94955 611 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 RETREG2Q8NC44 543 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 NUP58Q9BVL2 599 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 LAMB2P55268 1798 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 PHLPP1O60346 1717 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 ANO9A1A5B4 782 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 USP17L12C9JPN9 530 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 USP17L21D6R901 530 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 RNF40O75150 1001 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 BLIDQ8IZY5 108 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 GIMAP8Q8ND71 665 aaPredicted RBP16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 ZNF384Q8TF68 577 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 COG1Q8WTW3 980 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 SH3GLB2Q9NR46 395 aa16.65■□□□□ 0.26
SMARCA4-219ENST00000592604 EIF3CLB5ME19 914 aaKnown RBP16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 CYLC1P35663 651 aaPredicted RBP16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 GYG1P46976 350 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 STIM1Q13586 685 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 TTI2Q6NXR4 508 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 FOXR1Q6PIV2 292 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 CCDC170Q8IYT3 715 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 JAKMIP2Q96AA8 810 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 PURBQ96QR8 312 aaKnown RBP16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 EIF3CQ99613 913 aaKnown RBP16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 PSMA7O14818 248 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 NTSR2O95665 410 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 UBE4AQ14139 1066 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 KBTBD4Q9NVX7 518 aa16.64■□□□□ 0.25
SMARCA4-219ENST00000592604 NMT2O60551 498 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 SRGAP2O75044 1071 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 KIAA1328Q86T90 577 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 AFAP1L1Q8TED9 768 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 DHTKD1Q96HY7 919 aaPredicted RBP16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 CCSER1Q9C0I3 900 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 MAGEC2Q9UBF1 373 aaPredicted RBP16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 CDK17Q00537 523 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 INTS5Q6P9B9 1019 aaKnown RBP16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 DTHD1Q6ZMT9 781 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 GOLGA6L1Q8N7Z2 621 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 TRIM47Q96LD4 638 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 EXOC1Q9NV70 894 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 PCDHA4Q9UN74 947 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 TFR2Q9UP52 801 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 FAM205AQ6ZU69 1335 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 RASSF10A6NK89 507 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 M0R2N6 131 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 CCNI2Q6ZMN8 369 aaPredicted RBP16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 LACRTQ9GZZ8 138 aa16.63■□□□□ 0.25
SMARCA4-219ENST00000592604 RCCD1A6NED2 376 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 CAMTA2O94983 1202 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 KIF5BP33176 963 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 ZBED6P86452 979 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 ZNF622Q969S3 477 aaKnown RBP eCLIP16.62■□□□□ 0.255e-11■■□□□ 13.2
SMARCA4-219ENST00000592604 DUSP9Q99956 384 aaKnown RBP16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 TUBGCP2Q9BSJ2 902 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 NHEJ1Q9H9Q4 299 aaPredicted RBP16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 AGPAT5Q9NUQ2 364 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 ZNHIT6Q9NWK9 470 aaKnown RBP16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 COL4A1P02462 1669 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 RCSD1Q6JBY9 416 aa16.62■□□□□ 0.25
SMARCA4-219ENST00000592604 LAMB1P07942 1786 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 B4DLN1 442 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 TNNT3P45378 269 aaPredicted RBP16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 FIGNQ5HY92 759 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 RSPH14Q9UHP6 348 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 PES1O00541 588 aaKnown RBP16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 PPFIA4O75335 1185 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 FAM47AQ5JRC9 791 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 CAPZA3Q96KX2 299 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 DCP1AQ9NPI6 582 aaPredicted RBP16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 CCDC87Q9NVE4 849 aa16.61■□□□□ 0.25
SMARCA4-219ENST00000592604 A0A1W2PQJ5 194 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 PDE2AO00408 941 aaPredicted RBP16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 TRIM21P19474 475 aaKnown RBP16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 EVX2Q03828 476 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 GRIPAP1Q4V328 841 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 SBK1Q52WX2 424 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 CAVIN4Q5BKX8 364 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 NSUN4Q96CB9 384 aaKnown RBP16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 SLAIN2Q9P270 581 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 IPO7O95373 1038 aaKnown RBP16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 CCNE1P24864 410 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 UBA7P41226 1012 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 MAGEA9P43362 315 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 TBC1D8BQ0IIM8 1120 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 IQCEQ6IPM2 695 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 CSGALNACT2Q8N6G5 542 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 FAM84BQ96KN1 310 aaPredicted RBP16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 TMEM60Q9H2L4 133 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 CUEDC2Q9H467 287 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 MAGEF1Q9HAY2 307 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 ATP8A2Q9NTI2 1148 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 SCN7AQ01118 1682 aa16.6■□□□□ 0.25
SMARCA4-219ENST00000592604 LAD1O00515 517 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms