RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 HCN4Q9Y3Q4 1203 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 CTDP1Q9Y5B0 961 aaPredicted RBP12.62□□□□□ -0.39
RFFL-209ENST00000581265 PCDHB15Q9Y5E8 787 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 LTBP2Q14767 1821 aa12.62□□□□□ -0.39
RFFL-209ENST00000581265 PLXNA1Q9UIW2 1896 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 PLIN4Q96Q06 1357 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 SLC3A2P08195 630 aaKnown RBP12.61□□□□□ -0.39
RFFL-209ENST00000581265 TSPY3P0CV98 308 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 TSPY8P0CW00 308 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 BMP3P12645 472 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 SLC4A3P48751 1232 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 TFAP4Q01664 338 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 FAAP100Q0VG06 881 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 KCNA10Q16322 511 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 SLFN13Q68D06 897 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 ANKRD35Q8N283 1001 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 LENG1Q96BZ8 264 aaPredicted RBP12.61□□□□□ -0.39
RFFL-209ENST00000581265 FGD4Q96M96 766 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 STARD7Q9NQZ5 370 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 TMEM39AQ9NV64 488 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.61□□□□□ -0.39
RFFL-209ENST00000581265 ELP1O95163 1332 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 SYNRGQ9UMZ2 1314 aa12.61□□□□□ -0.39
RFFL-209ENST00000581265 DCDC2CA8MYV0 355 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 TMEM232C9JQI7 657 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 PQBP1O60828 265 aaKnown RBP12.6□□□□□ -0.39
RFFL-209ENST00000581265 RAG1P15918 1043 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 CST5P28325 142 aaPredicted RBP12.6□□□□□ -0.39
RFFL-209ENST00000581265 CDK7P50613 346 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 EPHB4P54760 987 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 PPARAQ07869 468 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 PPP4R3BQ5MIZ7 849 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 LRRC47Q8N1G4 583 aaKnown RBP12.6□□□□□ -0.39
RFFL-209ENST00000581265 PCSK9Q8NBP7 692 aaKnown RBP12.6□□□□□ -0.39
RFFL-209ENST00000581265 OTUD7AQ8TE49 926 aaPredicted RBP12.6□□□□□ -0.39
RFFL-209ENST00000581265 CHURC1Q8WUH1 139 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 GMCL1Q96IK5 515 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 FSD1Q9BTV5 496 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 NAPBQ9H115 298 aa12.6□□□□□ -0.39
RFFL-209ENST00000581265 ZHX1Q9UKY1 873 aaPredicted RBP12.6□□□□□ -0.39
RFFL-209ENST00000581265 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.59□□□□□ -0.39
RFFL-209ENST00000581265 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.59□□□□□ -0.39
RFFL-209ENST00000581265 PLA2G6O60733 806 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 STAT2P52630 851 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 GJA9P57773 515 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 NKX3-2P78367 333 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 CCDC144BQ3MJ40 725 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 FAM160B2Q86V87 743 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 FAM133AQ8N9E0 248 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 STAG1Q8WVM7 1258 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 GLT1D1Q96MS3 346 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 KATNBL1Q9H079 304 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 UPF3AQ9H1J1 476 aaKnown RBP12.59□□□□□ -0.39
RFFL-209ENST00000581265 TSPYL2Q9H2G4 693 aaPredicted RBP12.59□□□□□ -0.39
RFFL-209ENST00000581265 ZNF576Q9H609 170 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 SPC25Q9HBM1 224 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 ZNF536O15090 1300 aa12.59□□□□□ -0.39
RFFL-209ENST00000581265 MYADML2A6NDP7 307 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 FOXP2O15409 715 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 ADCY6O43306 1168 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 TIMP1P01033 207 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 C6orf222P0C671 652 aaPredicted RBP12.58□□□□□ -0.4
RFFL-209ENST00000581265 MX1P20591 662 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 MCCP23508 829 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 DNAJB2P25686 324 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 SLC1A4P43007 532 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 CNTN2Q02246 1040 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 FPGSQ05932 587 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 CCDC85BQ15834 202 aaPredicted RBP12.58□□□□□ -0.4
RFFL-209ENST00000581265 TKFCQ3LXA3 575 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 RCSD1Q6JBY9 416 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 CCDC129Q6ZRS4 1044 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 ARMCX2Q7L311 632 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 CCDC144CPQ8IYA2 1237 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 TIFAQ96CG3 184 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 ACAD9Q9H845 621 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 IL17RBQ9NRM6 502 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 TBX21Q9UL17 535 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.58□□□□□ -0.4
RFFL-209ENST00000581265 LAMA2P24043 3122 aaKnown RBP12.58□□□□□ -0.4
RFFL-209ENST00000581265 MYH4Q9Y623 1939 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 MROH7Q68CQ1 1323 aa12.58□□□□□ -0.4
RFFL-209ENST00000581265 TTC28Q96AY4 2481 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 CTAGE5O15320 804 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 ASGR1P07306 291 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 FGRP09769 529 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 NOVP48745 357 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 IRX5P78411 483 aaPredicted RBP12.57□□□□□ -0.4
RFFL-209ENST00000581265 GNASQ5JWF2 1037 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 AGBL1Q96MI9 1066 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 A1CFQ9NQ94 594 aaKnown RBP12.57□□□□□ -0.4
RFFL-209ENST00000581265 HOMER2Q9NSB8 354 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 ANAPC4Q9UJX5 808 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 SALL3Q9BXA9 1300 aa12.57□□□□□ -0.4
RFFL-209ENST00000581265 SPTBN5Q9NRC6 3674 aaKnown RBP12.57□□□□□ -0.4
RFFL-209ENST00000581265 SOWAHBA6NEL2 793 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 ASB14A6NK59 587 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 TSPY2A6NKD2 308 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 ARVCFO00192 962 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 IGFBP4P22692 258 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms