RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 FECHP22830 423 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 HERVK_113P62684 666 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 AMPD2Q01433 879 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 USP17L1Q7RTZ2 530 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 JAKMIP2Q96AA8 810 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 PLEKHA4Q9H4M7 779 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 MYO1AQ9UBC5 1043 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 ACTN2P35609 894 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 MTIF2P46199 727 aaKnown RBP19.16■□□□□ 0.66
VPS53-215ENST00000573028 HPS3Q969F9 1004 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 TUBGCP2Q9BSJ2 902 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 LACRTQ9GZZ8 138 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 HAUS4Q9H6D7 363 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 MKNK2Q9HBH9 465 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 ZNHIT6Q9NWK9 470 aaKnown RBP19.16■□□□□ 0.66
VPS53-215ENST00000573028 CWC15Q9P013 229 aaKnown RBP19.16■□□□□ 0.66
VPS53-215ENST00000573028 ANKRD36CQ5JPF3 1778 aa19.16■□□□□ 0.66
VPS53-215ENST00000573028 RCSD1Q6JBY9 416 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 WDR59Q6PJI9 974 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 PCDHA4Q9UN74 947 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 COL4A1P02462 1669 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 MRPS25P82663 173 aaKnown RBP19.15■□□□□ 0.66
VPS53-215ENST00000573028 FOXR1Q6PIV2 292 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 DZIP1Q86YF9 867 aaKnown RBP19.15■□□□□ 0.66
VPS53-215ENST00000573028 C4orf32Q8N8J7 132 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 GOLGA5Q8TBA6 731 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 RIN2Q8WYP3 895 aaPredicted RBP19.15■□□□□ 0.66
VPS53-215ENST00000573028 ARL6IP4Q66PJ3 421 aaKnown RBP19.15■□□□□ 0.66
VPS53-215ENST00000573028 CICQ96RK0 1608 aaPredicted RBP19.15■□□□□ 0.66
VPS53-215ENST00000573028 DUOX1Q9NRD9 1551 aa19.15■□□□□ 0.66
VPS53-215ENST00000573028 RCCD1A6NED2 376 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 ORC4O43929 436 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 ADAMTS2O95450 1211 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 ASIC1P78348 528 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 PDE4DQ08499 809 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 LETM2Q2VYF4 491 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 SLC44A5Q8NCS7 719 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 PSMB7Q99436 277 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 TRIM34Q9BYJ4 488 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 FAM204AQ9H8W3 233 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 ZNF652Q9Y2D9 606 aa19.14■□□□□ 0.66
VPS53-215ENST00000573028 LRP5O75197 1615 aa19.14■□□□□ 0.65
VPS53-215ENST00000573028 TULP2O00295 520 aa19.14■□□□□ 0.65
VPS53-215ENST00000573028 HIBADHP31937 336 aaKnown RBP19.14■□□□□ 0.65
VPS53-215ENST00000573028 DDB1Q16531 1140 aa19.14■□□□□ 0.65
VPS53-215ENST00000573028 VAT1LQ9HCJ6 419 aa19.14■□□□□ 0.65
VPS53-215ENST00000573028 BSDC1Q9NW68 430 aaPredicted RBP19.14■□□□□ 0.65
VPS53-215ENST00000573028 BCORQ6W2J9 1755 aa19.14■□□□□ 0.65
VPS53-215ENST00000573028 ANKRD65E5RJM6 399 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 KRT86O43790 486 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 MUM1L1Q5H9M0 696 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 TRAPPC11Q7Z392 1133 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 KRT26Q7Z3Y9 468 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 MATR3P43243 847 aaKnown RBP eCLIP19.13■□□□□ 0.659e-10■■□□□ 13.9
VPS53-215ENST00000573028 GOLGA6L1Q8N7Z2 621 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 SMCR8Q8TEV9 937 aaPredicted RBP19.13■□□□□ 0.65
VPS53-215ENST00000573028 ACBD3Q9H3P7 528 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 FEZ2Q9UHY8 353 aaPredicted RBP19.13■□□□□ 0.65
VPS53-215ENST00000573028 TAF1P21675 1872 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 NKRFO15226 690 aaKnown RBP eCLIP19.13■□□□□ 0.65
VPS53-215ENST00000573028 FGRP09769 529 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 PCP11498 1178 aaKnown RBP19.13■□□□□ 0.65
VPS53-215ENST00000573028 FCER1AP12319 257 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 IDEP14735 1019 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 PLCG1P19174 1290 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 LRRC15Q8TF66 581 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 NHEJ1Q9H9Q4 299 aaPredicted RBP19.13■□□□□ 0.65
VPS53-215ENST00000573028 EXOC1Q9NV70 894 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 CAPN11Q9UMQ6 739 aa19.13■□□□□ 0.65
VPS53-215ENST00000573028 EEF1GP26641 437 aaKnown RBP19.12■□□□□ 0.65
VPS53-215ENST00000573028 CYLC1P35663 651 aaPredicted RBP19.12■□□□□ 0.65
VPS53-215ENST00000573028 DNM2P50570 870 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 TUBB4BP68371 445 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 KRT83P78385 493 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 TXNRD3Q86VQ6 643 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 CNOT6LQ96LI5 555 aaKnown RBP19.12■□□□□ 0.65
VPS53-215ENST00000573028 IL17RBQ9NRM6 502 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 PCDHA6Q9UN73 950 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 PCDHA8Q9Y5H6 950 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 USP14P54578 494 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 DNAJC7Q99615 494 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 NOC4LQ9BVI4 516 aaKnown RBP19.12■□□□□ 0.65
VPS53-215ENST00000573028 ATP8A2Q9NTI2 1148 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 SAP30BPQ9UHR5 308 aaKnown RBP19.12■□□□□ 0.65
VPS53-215ENST00000573028 KLRC4O43908 158 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 TSPY3P0CV98 308 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 TSPY8P0CW00 308 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 STK4Q13043 487 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 CCDC96Q2M329 555 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 ANKRD40Q6AI12 368 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 ZNF507Q8TCN5 953 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 TCP11L1Q9NUJ3 509 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 ARPP21Q9UBL0 812 aaPredicted RBP19.12■□□□□ 0.65
VPS53-215ENST00000573028 RSPH14Q9UHP6 348 aa19.12■□□□□ 0.65
VPS53-215ENST00000573028 MYO1CO00159 1063 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 PSMD14O00487 310 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 KCNQ2O43526 872 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 CCNT1O60563 726 aaKnown RBP19.11■□□□□ 0.65
VPS53-215ENST00000573028 RNF40O75150 1001 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 PLEKP08567 350 aaPredicted RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms