RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 STAT2P52630 851 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 RCAN1P53805 252 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 FGD1P98174 961 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 FAM110CQ1W6H9 321 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 ASPRV1Q53RT3 343 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 SLF1Q9BQI6 1058 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 BACH2Q9BYV9 841 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 LY9Q9HBG7 655 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 RABGAP1Q9Y3P9 1069 aa24.03■■□□□ 1.44
VPS53-210ENST00000571456 DNAH12Q6ZR08 3092 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 CCDC69A6NI79 296 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 HMGCRP04035 888 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 DSG3P32926 999 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 RBM25P49756 843 aaKnown RBP24.02■■□□□ 1.44
VPS53-210ENST00000571456 SYNE3Q6ZMZ3 975 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 CHST3Q7LGC8 479 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 P2RX7Q99572 595 aaKnown RBP24.02■■□□□ 1.44
VPS53-210ENST00000571456 MORF4L1Q9UBU8 362 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 PPP1R9AQ9ULJ8 1098 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 ADAMTS5Q9UNA0 930 aa24.02■■□□□ 1.44
VPS53-210ENST00000571456 ZNF543Q08ER8 600 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 BTNL9Q6UXG8 535 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 NFXL1Q6ZNB6 911 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 FAM161BQ96MY7 647 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 AGXT2Q9BYV1 514 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 C22orf23Q9BZE7 217 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 HMX1Q9NP08 348 aaPredicted RBP24.01■■□□□ 1.43
VPS53-210ENST00000571456 PNMA2Q9UL42 364 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 A0A0G2JMZ2 1700 aa24.01■■□□□ 1.43
VPS53-210ENST00000571456 SPDYE16A6NNV3 312 aaPredicted RBP24■■□□□ 1.43
VPS53-210ENST00000571456 PARP1P09874 1014 aaKnown RBP24■■□□□ 1.43
VPS53-210ENST00000571456 PPP2R5BQ15173 497 aa24■■□□□ 1.43
VPS53-210ENST00000571456 CCDC96Q2M329 555 aa24■■□□□ 1.43
VPS53-210ENST00000571456 SLC12A7Q9Y666 1083 aa24■■□□□ 1.43
VPS53-210ENST00000571456 TMEM232C9JQI7 657 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 KIF5BP33176 963 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 CCNA1P78396 465 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 TROAPQ12815 778 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 ZNF654Q8IZM8 581 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 ANKRD13CQ8N6S4 541 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 ALDH8A1Q9H2A2 487 aaPredicted RBP23.99■■□□□ 1.43
VPS53-210ENST00000571456 OGDHLQ9ULD0 1010 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 MUC3AQ02505 3323 aa23.99■■□□□ 1.43
VPS53-210ENST00000571456 COPB2P35606 906 aa23.98■■□□□ 1.43
VPS53-210ENST00000571456 GNAQP50148 359 aa23.98■■□□□ 1.43
VPS53-210ENST00000571456 OAZ1P54368 228 aa23.98■■□□□ 1.43
VPS53-210ENST00000571456 GPRC5AQ8NFJ5 357 aa23.98■■□□□ 1.43
VPS53-210ENST00000571456 NUP88Q99567 741 aaPredicted RBP23.98■■□□□ 1.43
VPS53-210ENST00000571456 ISY1Q9ULR0 285 aaKnown RBP23.98■■□□□ 1.43
VPS53-210ENST00000571456 PFASO15067 1338 aa23.97■■□□□ 1.43
VPS53-210ENST00000571456 MDM2Q00987 491 aaPredicted RBP23.97■■□□□ 1.43
VPS53-210ENST00000571456 IKQ13123 557 aaPredicted RBP23.97■■□□□ 1.43
VPS53-210ENST00000571456 GRM4Q14833 912 aa23.97■■□□□ 1.43
VPS53-210ENST00000571456 ANKRD1Q15327 319 aa23.97■■□□□ 1.43
VPS53-210ENST00000571456 Q6ZUG5 572 aa23.97■■□□□ 1.43
VPS53-210ENST00000571456 CTCFLQ8NI51 663 aaPredicted RBP23.97■■□□□ 1.43
VPS53-210ENST00000571456 LZTS2Q9BRK4 669 aa23.97■■□□□ 1.43
VPS53-210ENST00000571456 CTDP1Q9Y5B0 961 aaPredicted RBP23.97■■□□□ 1.43
VPS53-210ENST00000571456 VWA5AO00534 786 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 ATP2A1O14983 1001 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 ZBED4O75132 1171 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 SMARCA1P28370 1054 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 EVCP57679 992 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 KCTD1Q719H9 257 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 RBPJLQ9UBG7 517 aa23.96■■□□□ 1.43
VPS53-210ENST00000571456 ERVK-9P63128 1117 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 ERVK-24P63145 666 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 TRIM32Q13049 653 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 ZNF697Q5TEC3 545 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 SLC38A10Q9HBR0 1119 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 PDRG1Q9NUG6 133 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 MTMR7Q9Y216 660 aa23.95■■□□□ 1.42
VPS53-210ENST00000571456 COL11A1P12107 1806 aaPredicted RBP23.94■■□□□ 1.42
VPS53-210ENST00000571456 PALM3A6NDB9 673 aaPredicted RBP23.94■■□□□ 1.42
VPS53-210ENST00000571456 SYDE2Q5VT97 1194 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 APOA5Q6Q788 366 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 SHCBP1Q8NEM2 672 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 MAFAQ8NHW3 353 aaPredicted RBP23.94■■□□□ 1.42
VPS53-210ENST00000571456 KIFC2Q96AC6 838 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 ATG4CQ96DT6 458 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 LRRC2Q9BYS8 371 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 FBXO28Q9NVF7 368 aa23.94■■□□□ 1.42
VPS53-210ENST00000571456 RBM28Q9NW13 759 aaKnown RBP23.94■■□□□ 1.42
VPS53-210ENST00000571456 CDH23Q9H251 3354 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 CCDC196A0A1B0GTZ2 297 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 ZBTB43O43298 467 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 SLC25A27O95847 323 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 COL9A1P20849 921 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 TRAF1Q13077 416 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 BRF1Q92994 677 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 TCEANC2Q96MN5 208 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 TBC1D32Q96NH3 1257 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 UPF3BQ9BZI7 483 aaKnown RBP23.93■■□□□ 1.42
VPS53-210ENST00000571456 SENP2Q9HC62 589 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 PRR12Q9ULL5 1215 aa23.93■■□□□ 1.42
VPS53-210ENST00000571456 FRMPD2Q68DX3 1309 aaPredicted RBP23.92■■□□□ 1.42
VPS53-210ENST00000571456 KLRF2D3W0D1 207 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 MAPK4P31152 587 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 COL9A3Q14050 684 aaPredicted RBP23.92■■□□□ 1.42
VPS53-210ENST00000571456 CCAR1Q8IX12 1150 aaKnown RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms