RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 DNM2P50570 870 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 CACNB1Q02641 598 aaPredicted RBP12.92□□□□□ -0.34
CDH1-210ENST00000566612 NFIXQ14938 502 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 NTRK3Q16288 839 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 ZNF658Q5TYW1 1059 aaPredicted RBP12.92□□□□□ -0.34
CDH1-210ENST00000566612 EPC1Q9H2F5 836 aa12.92□□□□□ -0.34
CDH1-210ENST00000566612 H0YHG0 523 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 APBA3O96018 575 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 SSR1P43307 286 aaKnown RBP12.91□□□□□ -0.34
CDH1-210ENST00000566612 MTF1Q14872 753 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 UBE2SQ16763 222 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 BCCIPQ9P287 314 aaKnown RBP eCLIP12.91□□□□□ -0.34
CDH1-210ENST00000566612 KMT5BQ4FZB7 885 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 PRR16Q569H4 304 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 GALNT17Q6IS24 598 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 SPICE1Q8N0Z3 855 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 CCDC51Q96ER9 411 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 SERPINB13Q9UIV8 391 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 TUBE1Q9UJT0 475 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 PCDHA1Q9Y5I3 950 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 TCRBV5S4A2TA0A5A2 114 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 USP17L5A8MUK1 530 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 HMGB2P26583 209 aaKnown RBP12.91□□□□□ -0.34
CDH1-210ENST00000566612 CNOT6LQ96LI5 555 aaKnown RBP12.91□□□□□ -0.34
CDH1-210ENST00000566612 TSPYL1Q9H0U9 437 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 DISC1Q9NRI5 854 aa12.91□□□□□ -0.34
CDH1-210ENST00000566612 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.91□□□□□ -0.34
CDH1-210ENST00000566612 EFCAB8A8MWE9 144 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 BBOX1O75936 387 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 ERLIN2O94905 339 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 CDR1P51861 262 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 DNAJC21Q5F1R6 531 aaKnown RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 TXNRD3Q86VQ6 643 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 IFT81Q8WYA0 676 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 MTA3Q9BTC8 594 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 IRX2Q9BZI1 471 aaPredicted RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 DDX25Q9UHL0 483 aaKnown RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 FAM196BA6NMK8 535 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 CETN3O15182 167 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 PPP1R2P41236 205 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 TOB1P50616 345 aaPredicted RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 CEP95Q96GE4 821 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 NUP58Q9BVL2 599 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 EHMT1Q9H9B1 1298 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 PRCPP42785 496 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 CYP4A11Q02928 519 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 CERKLQ49MI3 558 aaPredicted RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 SEPT12Q8IYM1 358 aa12.9□□□□□ -0.34
CDH1-210ENST00000566612 GPR161Q8N6U8 529 aaKnown RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 SECISBP2LQ93073 1101 aaKnown RBP12.9□□□□□ -0.34
CDH1-210ENST00000566612 DDX39AO00148 427 aaKnown RBP12.9□□□□□ -0.35
CDH1-210ENST00000566612 PPEF1O14829 653 aaPredicted RBP12.9□□□□□ -0.35
CDH1-210ENST00000566612 CAPN2P17655 700 aa12.9□□□□□ -0.35
CDH1-210ENST00000566612 GPBP1Q86WP2 473 aa12.9□□□□□ -0.35
CDH1-210ENST00000566612 VGLL2Q8N8G2 317 aa12.9□□□□□ -0.35
CDH1-210ENST00000566612 PHF20Q9BVI0 1012 aa12.9□□□□□ -0.35
CDH1-210ENST00000566612 IFIH1Q9BYX4 1025 aaKnown RBP12.9□□□□□ -0.35
CDH1-210ENST00000566612 QTRT2Q9H974 415 aaKnown RBP12.9□□□□□ -0.35
CDH1-210ENST00000566612 MYO6Q9UM54 1294 aa12.9□□□□□ -0.35
CDH1-210ENST00000566612 H0YIN7 160 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 SP4Q02446 784 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 TROAPQ12815 778 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 PTPROQ16827 1216 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 C12orf60Q5U649 245 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CCDC174Q6PII3 467 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 HDXQ7Z353 690 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CALCOCO1Q9P1Z2 691 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 RWDD2AQ9UIY3 292 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 HDAC9Q9UKV0 1011 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 KIAA1024Q9UPX6 916 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 SALL1Q9NSC2 1324 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CYP27A1Q02318 531 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CETN1Q12798 172 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 SLFN13Q68D06 897 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 HS2ST1Q7LGA3 356 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CLEC10AQ8IUN9 316 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 FAM217BQ9NTX9 383 aaPredicted RBP12.89□□□□□ -0.35
CDH1-210ENST00000566612 TMEM260Q9NX78 707 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 DNM3Q9UQ16 869 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 ALDH1B1P30837 517 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 RCAN1P53805 252 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 SNAP25P60880 206 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 GPSM2P81274 684 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 STXBP4Q6ZWJ1 553 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 FBXO33Q7Z6M2 555 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CCDC84Q86UT8 332 aaPredicted RBP12.89□□□□□ -0.35
CDH1-210ENST00000566612 MYOCDQ8IZQ8 938 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 CPXCR1Q8N123 301 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 LARP4BQ92615 738 aaKnown RBP12.89□□□□□ -0.35
CDH1-210ENST00000566612 MAP3K14Q99558 947 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 NBPF3Q9H094 633 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 GOPCQ9HD26 462 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 SAR1BQ9Y6B6 198 aa12.89□□□□□ -0.35
CDH1-210ENST00000566612 ORC4O43929 436 aa12.88□□□□□ -0.35
CDH1-210ENST00000566612 GDF11O95390 407 aa12.88□□□□□ -0.35
CDH1-210ENST00000566612 PPARDQ03181 441 aa12.88□□□□□ -0.35
CDH1-210ENST00000566612 TCP11X2Q5H9J9 407 aa12.88□□□□□ -0.35
CDH1-210ENST00000566612 ARL6IP4Q66PJ3 421 aaKnown RBP12.88□□□□□ -0.35
CDH1-210ENST00000566612 MAATS1Q7Z4T9 603 aa12.88□□□□□ -0.35
CDH1-210ENST00000566612 P2RX5Q93086 422 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms