RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SNAP25P60880 206 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 LRRC41Q15345 812 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 FAM133AQ8N9E0 248 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 ARRDC4Q8NCT1 418 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 DDX11Q96FC9 970 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 SENP6Q9GZR1 1112 aaPredicted RBP17.55■□□□□ 0.4
CLN3-213ENST00000565047 KATNBL1Q9H079 304 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 RANBP17Q9H2T7 1088 aaKnown RBP17.55■□□□□ 0.4
CLN3-213ENST00000565047 PCDH10Q9P2E7 1040 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 ZMYND8Q9ULU4 1186 aaPredicted RBP17.55■□□□□ 0.4
CLN3-213ENST00000565047 TRIOBPQ9H2D6 2365 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 SMCHD1A6NHR9 2005 aa17.55■□□□□ 0.4
CLN3-213ENST00000565047 LAMA4Q16363 1823 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 ASTN1O14525 1302 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 NT5C2P49902 561 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 CNTN2Q02246 1040 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 SNX17Q15036 470 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 TKFCQ3LXA3 575 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 ANKS1AQ92625 1134 aa17.54■□□□□ 0.4
CLN3-213ENST00000565047 RNF41Q9H4P4 317 aaPredicted RBP17.54■□□□□ 0.4
CLN3-213ENST00000565047 A1CFQ9NQ94 594 aaKnown RBP17.54■□□□□ 0.4
CLN3-213ENST00000565047 A0A1W2PPC1 479 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 ADAMTS4O75173 837 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 SYN1P17600 705 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 SLC16A2P36021 539 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 SLC4A3P48751 1232 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 DGKHQ86XP1 1220 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 ANKRD35Q8N283 1001 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 ACAD9Q9H845 621 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 TOMM22Q9NS69 142 aa17.53■□□□□ 0.4
CLN3-213ENST00000565047 SOWAHBA6NEL2 793 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 ADCY6O43306 1168 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 CHMLP26374 656 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 MUM1L1Q5H9M0 696 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 C1orf53Q5VUE5 145 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 CCSAPQ6IQ19 270 aaPredicted RBP17.52■□□□□ 0.4
CLN3-213ENST00000565047 SLC39A5Q6ZMH5 540 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 ESR2Q92731 530 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 LENG1Q96BZ8 264 aaPredicted RBP17.52■□□□□ 0.4
CLN3-213ENST00000565047 TRERF1Q96PN7 1200 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 XPNPEP3Q9NQH7 507 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 HOMER2Q9NSB8 354 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 RNF146Q9NTX7 359 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.52■□□□□ 0.4
CLN3-213ENST00000565047 ZSWIM5Q9P217 1185 aa17.52■□□□□ 0.4
CLN3-213ENST00000565047 CTDP1Q9Y5B0 961 aaPredicted RBP17.52■□□□□ 0.4
CLN3-213ENST00000565047 FRMPD2Q68DX3 1309 aaPredicted RBP17.51■□□□□ 0.39
CLN3-213ENST00000565047 KDM4AO75164 1064 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 ICAM1P05362 532 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 RARBP10826 455 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 AKR1A1P14550 325 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 MAGEA10P43363 369 aaPredicted RBP17.51■□□□□ 0.39
CLN3-213ENST00000565047 ZNF543Q08ER8 600 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 IKQ13123 557 aaPredicted RBP17.51■□□□□ 0.39
CLN3-213ENST00000565047 ACVR2BQ13705 512 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 CCDC174Q6PII3 467 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 KLHDC9Q8NEP7 349 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 ZKSCAN3Q9BRR0 538 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 CYP39A1Q9NYL5 469 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 PHF24Q9UPV7 400 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 MTMR7Q9Y216 660 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 CNPY2Q9Y2B0 182 aa17.51■□□□□ 0.39
CLN3-213ENST00000565047 PGK1P00558 417 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 ADCYAP1R1P41586 468 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 ATN1P54259 1190 aaPredicted RBP17.5■□□□□ 0.39
CLN3-213ENST00000565047 CCDC96Q2M329 555 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 SYDE2Q5VT97 1194 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 ARMCX2Q7L311 632 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 CCDC144CPQ8IYA2 1237 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 ABHD16BQ9H3Z7 469 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 GPCPD1Q9NPB8 672 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 CTNNA3Q9UI47 895 aa17.5■□□□□ 0.39
CLN3-213ENST00000565047 RAD50Q92878 1312 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 B4E1Z4 1266 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 KBTBD13C9JR72 458 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 POTEB2H3BUK9 544 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 ALAS1P13196 640 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 RTP1P59025 263 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 NKX3-2P78367 333 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 IRX5P78411 483 aaPredicted RBP17.49■□□□□ 0.39
CLN3-213ENST00000565047 PTH1RQ03431 593 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 IMMTQ16891 758 aaKnown RBP17.49■□□□□ 0.39
CLN3-213ENST00000565047 ENAHQ8N8S7 591 aaPredicted RBP17.49■□□□□ 0.39
CLN3-213ENST00000565047 MORC4Q8TE76 937 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 FAM184BQ9ULE4 1060 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 ISY1Q9ULR0 285 aaKnown RBP17.49■□□□□ 0.39
CLN3-213ENST00000565047 LCTP09848 1927 aa17.49■□□□□ 0.39
CLN3-213ENST00000565047 SYNRGQ9UMZ2 1314 aa17.48■□□□□ 0.39
CLN3-213ENST00000565047 SOX1O00570 391 aaPredicted RBP17.48■□□□□ 0.39
CLN3-213ENST00000565047 CTAGE5O15320 804 aa17.48■□□□□ 0.39
CLN3-213ENST00000565047 DUSP11O75319 330 aaKnown RBP17.48■□□□□ 0.39
CLN3-213ENST00000565047 CLEC4DQ8WXI8 215 aa17.48■□□□□ 0.39
CLN3-213ENST00000565047 PURBQ96QR8 312 aaKnown RBP17.48■□□□□ 0.39
CLN3-213ENST00000565047 ZSCAN10Q96SZ4 725 aaPredicted RBP17.48■□□□□ 0.39
CLN3-213ENST00000565047 CCPG1Q9ULG6 757 aa17.48■□□□□ 0.39
CLN3-213ENST00000565047 MYADML2A6NDP7 307 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 SGSM2O43147 1006 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 CST5P28325 142 aaPredicted RBP17.47■□□□□ 0.39
CLN3-213ENST00000565047 SEC23AQ15436 765 aa17.47■□□□□ 0.39
CLN3-213ENST00000565047 CCDC144BQ3MJ40 725 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms