RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 MAMDC4Q6UXC1 1216 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 ANKRD35Q8N283 1001 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 MSL3Q8N5Y2 521 aaKnown RBP12.79□□□□□ -0.36
VPS39-208ENST00000564994 LENG1Q96BZ8 264 aaPredicted RBP12.79□□□□□ -0.36
VPS39-208ENST00000564994 TMEM47Q9BQJ4 181 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 IL25Q9H293 177 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 XPNPEP3Q9NQH7 507 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 HOMER2Q9NSB8 354 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 TCP11L1Q9NUJ3 509 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 SYNGAP1Q96PV0 1343 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 LAMA2P24043 3122 aaKnown RBP12.78□□□□□ -0.36
VPS39-208ENST00000564994 KBTBD13C9JR72 458 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 SOX1O00570 391 aaPredicted RBP12.78□□□□□ -0.36
VPS39-208ENST00000564994 PGK1P00558 417 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 RARBP10826 455 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 TOP1P11387 765 aaKnown RBP12.78□□□□□ -0.36
VPS39-208ENST00000564994 ADCYAP1R1P41586 468 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 MFAP1P55081 439 aaKnown RBP12.78□□□□□ -0.36
VPS39-208ENST00000564994 CNTN2Q02246 1040 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 CCDC174Q6PII3 467 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 SLC39A5Q6ZMH5 540 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 MFSD6Q6ZSS7 791 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 ZNF467Q7Z7K2 595 aaPredicted RBP12.78□□□□□ -0.36
VPS39-208ENST00000564994 DCAF4Q8WV16 495 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 DIAPH3Q9NSV4 1193 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 RNF146Q9NTX7 359 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 FBXO40Q9UH90 709 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 CNPY2Q9Y2B0 182 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 LRRC37A2A6NM11 1700 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 NEDD4P46934 1319 aa12.78□□□□□ -0.36
VPS39-208ENST00000564994 ADAMTS4O75173 837 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 PCP11498 1178 aaKnown RBP12.77□□□□□ -0.37
VPS39-208ENST00000564994 AKR1A1P14550 325 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 GSPT1P15170 499 aaKnown RBP12.77□□□□□ -0.37
VPS39-208ENST00000564994 SLC16A2P36021 539 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 RTP1P59025 263 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 SNX17Q15036 470 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 CCDC96Q2M329 555 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 MUM1L1Q5H9M0 696 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 FAM133AQ8N9E0 248 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 FERMT2Q96AC1 680 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 ACAD9Q9H845 621 aa12.77□□□□□ -0.37
VPS39-208ENST00000564994 A1CFQ9NQ94 594 aaKnown RBP12.77□□□□□ -0.37
VPS39-208ENST00000564994 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.77□□□□□ -0.37
VPS39-208ENST00000564994 FRMPD2Q68DX3 1309 aaPredicted RBP12.77□□□□□ -0.37
VPS39-208ENST00000564994 SOWAHBA6NEL2 793 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 HIP1O00291 1037 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ZNF213O14771 459 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ADCY6O43306 1168 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 PDHBP11177 359 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ALAS1P13196 640 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 IRX5P78411 483 aaPredicted RBP12.76□□□□□ -0.37
VPS39-208ENST00000564994 MDM2Q00987 491 aaPredicted RBP12.76□□□□□ -0.37
VPS39-208ENST00000564994 ACVR2BQ13705 512 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 TKFCQ3LXA3 575 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 BTNL9Q6UXG8 535 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ARMCX2Q7L311 632 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 LRCH3Q96II8 777 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 TRERF1Q96PN7 1200 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ZKSCAN3Q9BRR0 538 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 KATNBL1Q9H079 304 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 RANBP17Q9H2T7 1088 aaKnown RBP12.76□□□□□ -0.37
VPS39-208ENST00000564994 GPCPD1Q9NPB8 672 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ZHX1Q9UKY1 873 aaPredicted RBP12.76□□□□□ -0.37
VPS39-208ENST00000564994 PHF24Q9UPV7 400 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ATP11BQ9Y2G3 1177 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 ASTN1O14525 1302 aa12.76□□□□□ -0.37
VPS39-208ENST00000564994 POTEB2H3BUK9 544 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 ICAM1P05362 532 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 SNHG28P0DPA3 235 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 TRIM60Q495X7 471 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 TTC22Q5TAA0 569 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 SYDE2Q5VT97 1194 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 RNF180Q86T96 592 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 CCDC144CPQ8IYA2 1237 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 ESR2Q92731 530 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 TTC14Q96N46 770 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 DSCC1Q9BVC3 393 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 ABHD16BQ9H3Z7 469 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 RNF41Q9H4P4 317 aaPredicted RBP12.75□□□□□ -0.37
VPS39-208ENST00000564994 FAM184BQ9ULE4 1060 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 SYNRGQ9UMZ2 1314 aa12.75□□□□□ -0.37
VPS39-208ENST00000564994 DDX49Q9Y6V7 483 aaKnown RBP12.75□□□□□ -0.37
VPS39-208ENST00000564994 MYH6P13533 1939 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 MYADML2A6NDP7 307 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 KDM4AO75164 1064 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 ZNF543Q08ER8 600 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 CCDC144BQ3MJ40 725 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 C1orf53Q5VUE5 145 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 CCSAPQ6IQ19 270 aaPredicted RBP12.74□□□□□ -0.37
VPS39-208ENST00000564994 TDHQ8IZJ6 230 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 KLHDC9Q8NEP7 349 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 PURBQ96QR8 312 aaKnown RBP12.74□□□□□ -0.37
VPS39-208ENST00000564994 UBE2OQ9C0C9 1292 aaKnown RBP12.74□□□□□ -0.37
VPS39-208ENST00000564994 CYP39A1Q9NYL5 469 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 CCPG1Q9ULG6 757 aa12.74□□□□□ -0.37
VPS39-208ENST00000564994 A0A1W2PQ45 241 aaPredicted RBP12.73□□□□□ -0.37
VPS39-208ENST00000564994 A0A1W2PQY0 241 aa12.73□□□□□ -0.37
VPS39-208ENST00000564994 B4E1Z4 1266 aa12.73□□□□□ -0.37
VPS39-208ENST00000564994 DUSP11O75319 330 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms