RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 POLD4Q9HCU8 107 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 TRAF5O00463 557 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 EPB41L2O43491 1005 aaKnown RBP10.38□□□□□ -0.75
VPS39-205ENST00000562258 ARID5AQ03989 594 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 FASTKD5Q7L8L6 764 aaKnown RBP10.38□□□□□ -0.75
VPS39-205ENST00000562258 GPIHBP1Q8IV16 184 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 CCDC150Q8NCX0 1101 aa10.38□□□□□ -0.75
VPS39-205ENST00000562258 NAP1L4Q99733 375 aaKnown RBP10.38□□□□□ -0.75
VPS39-205ENST00000562258 PNMA6FA0A0J9YX94 578 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 FAM170AA1A519 330 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 MEIS1O00470 390 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 FGFR1OPO95684 399 aaKnown RBP10.37□□□□□ -0.75
VPS39-205ENST00000562258 FOSP01100 380 aaPredicted RBP10.37□□□□□ -0.75
VPS39-205ENST00000562258 DNM2P50570 870 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 SNAPC2Q13487 334 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 PSMD1Q99460 953 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 PODXL2Q9NZ53 605 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 SLIT3O75094 1523 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 KRT13P13646 458 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 TNNT1P13805 278 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 IL1R1P14778 569 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 CDC27P30260 824 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 ALX1Q15699 326 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 IFT172Q9UG01 1749 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 LRP6O75581 1613 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 ZBTB5O15062 677 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 RGL2O15211 777 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 SMTNP53814 917 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 GLIPR1L2Q4G1C9 344 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 LRP10Q7Z4F1 713 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 CCDC65Q8IXS2 484 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 ADGRF4Q8IZF3 695 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 ANKRD13CQ8N6S4 541 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 TRPM4Q8TD43 1214 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 DRC1Q96MC2 740 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 TTC12Q9H892 705 aaPredicted RBP10.37□□□□□ -0.75
VPS39-205ENST00000562258 NMRK2Q9NPI5 230 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 GPRC5DQ9NZD1 345 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 MTMR6Q9Y217 621 aa10.37□□□□□ -0.75
VPS39-205ENST00000562258 SMIM22K7EJ46 135 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 GADD45BO75293 160 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 BIRC3Q13489 604 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 ANO6Q4KMQ2 910 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 DCAF17Q5H9S7 520 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 FAM102BQ5T8I3 360 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 MB21D2Q8IYB1 491 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 RAET1EQ8TD07 263 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 RTFDC1Q9BY42 306 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 NBPF3Q9H094 633 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 GRPEL1Q9HAV7 217 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 LY9Q9HBG7 655 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 DDX4Q9NQI0 724 aaKnown RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 RMND1Q9NWS8 449 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 M0QZ92 97 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 OR52Z1P0C646 297 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 HDLBPQ00341 1268 aaKnown RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 CRY2Q49AN0 593 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 TMTC3Q6ZXV5 915 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 LDHDQ86WU2 507 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 IL27Q8NEV9 243 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 ATG4CQ96DT6 458 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.36□□□□□ -0.75
VPS39-205ENST00000562258 CBFA2T2O43439 604 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 STX1AQ16623 288 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 DLK2Q6UY11 383 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 ZNF668Q96K58 619 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 ZNF512BQ96KM6 892 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 SPAG5Q96R06 1193 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 TMEM260Q9NX78 707 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 CLIC4Q9Y696 253 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 RPAP1Q9BWH6 1393 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 PPP4CP60510 307 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 CACNB1Q02641 598 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 TOB2Q14106 344 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 SPOUT1Q5T280 376 aaKnown RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 APOBEC3HQ6NTF7 200 aaKnown RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 AOPEPQ8N6M6 819 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 RBM46Q8TBY0 533 aaKnown RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 RIOK1Q9BRS2 568 aaKnown RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 FAM49AQ9H0Q0 323 aaPredicted RBP10.36□□□□□ -0.75
VPS39-205ENST00000562258 KIAA1024Q9UPX6 916 aa10.36□□□□□ -0.75
VPS39-205ENST00000562258 LRRIQ4A6NIV6 560 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 TRPA1O75762 1119 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 FCER1AP12319 257 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 TRIM21P19474 475 aaKnown RBP10.35□□□□□ -0.75
VPS39-205ENST00000562258 KARSQ15046 597 aaKnown RBP10.35□□□□□ -0.75
VPS39-205ENST00000562258 TEKT3Q9BXF9 490 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 PCDHA4Q9UN74 947 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 USO1O60763 962 aaKnown RBP10.35□□□□□ -0.75
VPS39-205ENST00000562258 DKC1O60832 514 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS39-205ENST00000562258 ZNF202O95125 648 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 GCNT3O95395 438 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 CCDC181Q5TID7 509 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 ANO3Q9BYT9 981 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 VCPKMTQ9H867 229 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 MYOM1P52179 1685 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 A0A0U1RQG5 324 aaPredicted RBP10.35□□□□□ -0.75
VPS39-205ENST00000562258 CAP2P40123 477 aa10.35□□□□□ -0.75
VPS39-205ENST00000562258 BAATQ14032 418 aaPredicted RBP10.35□□□□□ -0.75
VPS39-205ENST00000562258 DPF2Q92785 391 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms