RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 POTEMA6NI47 508 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 ALG1L2C9J202 215 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 HIP1O00291 1037 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 WNT7AO00755 349 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 VEGFAP15692 232 aaPredicted RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 MX1P20591 662 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 LMNB1P20700 586 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 PMLP29590 882 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 RFX5P48382 616 aaPredicted RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 ST5P78524 1137 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 FAM160A1Q05DH4 1040 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 C4orf17Q53FE4 359 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 ZC3H12BQ5HYM0 836 aaKnown RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 POTEGQ6S5H5 508 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 LDHAL6AQ6ZMR3 332 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 AGMOQ6ZNB7 445 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 TRIM42Q8IWZ5 723 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 REXO1Q8N1G1 1221 aaKnown RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 ST13P5Q8NFI4 369 aaPredicted RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 KAZALD1Q96I82 304 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 MPHOSPH8Q99549 860 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 TRIM56Q9BRZ2 755 aaKnown RBP6.13□□□□□ -1.43
LDLR-209ENST00000558528 GRIP2Q9C0E4 1043 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 ECHDC1Q9NTX5 307 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 CNTN3Q9P232 1028 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 MROH5Q6ZUA9 1318 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 ARFGEF1Q9Y6D6 1849 aa6.13□□□□□ -1.43
LDLR-209ENST00000558528 PHF20L1A8MW92 1017 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 SPATA31C2B4DYI2 1134 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 PPEF1O14829 653 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 EPB41L2O43491 1005 aaKnown RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 SBF1O95248 1867 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 NTSR2O95665 410 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 HCLS1P14317 486 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 ITGA6P23229 1130 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 RNF144AP50876 292 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 PDE1AP54750 535 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 SQSTM1Q13501 440 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 MPP2Q14168 576 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 WDR44Q5JSH3 913 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 EPHA10Q5JZY3 1008 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 CCDC158Q5M9N0 1113 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 TTC22Q5TAA0 569 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 DDX46Q7L014 1031 aaKnown RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 N4BP2Q86UW6 1770 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 CNTROBQ8N137 903 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 CELF2-AS1Q8N7Q2 184 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 RBBP8NLQ8NC74 664 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 ZSWIM2Q8NEG5 633 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 RTL9Q8NET4 1388 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 EMID1Q96A84 441 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 HSH2DQ96JZ2 352 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 MCOLN1Q9GZU1 580 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 TMX4Q9H1E5 349 aaPredicted RBP6.12□□□□□ -1.43
LDLR-209ENST00000558528 LIN7BQ9HAP6 207 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 ABCB6Q9NP58 842 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 CNNM1Q9NRU3 951 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 TOGARAM1Q9Y4F4 1720 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 SAMM50Q9Y512 469 aa6.12□□□□□ -1.43
LDLR-209ENST00000558528 LAMB4A4D0S4 1761 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 DOT1LQ8TEK3 1739 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 CARMIL3Q8ND23 1372 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 UBN2Q6ZU65 1347 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 PITPNM2Q9BZ72 1349 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 SERPINB2P05120 415 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 TM4SF1P30408 202 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 TGFB2P61812 414 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 MAP2K1Q02750 393 aaPredicted RBP6.11□□□□□ -1.43
LDLR-209ENST00000558528 NNTQ13423 1086 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 MAP3K11Q16584 847 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 LONRF2Q1L5Z9 754 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 SEZ6Q53EL9 994 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 RPS26P11Q5JNZ5 115 aaPredicted RBP6.11□□□□□ -1.43
LDLR-209ENST00000558528 HABP4Q5JVS0 413 aaKnown RBP6.11□□□□□ -1.43
LDLR-209ENST00000558528 METTL24Q5JXM2 366 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 TBC1D9BQ66K14 1250 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 TTBK2Q6IQ55 1244 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 CCDC81Q6ZN84 652 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 AACSQ86V21 672 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 ANKRD18AQ8IVF6 992 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 C19orf47Q8N9M1 422 aaKnown RBP6.11□□□□□ -1.43
LDLR-209ENST00000558528 CNBD1Q8NA66 436 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 ZNF280CQ8ND82 737 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.11□□□□□ -1.43
LDLR-209ENST00000558528 CHAC2Q8WUX2 184 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 RUFY2Q8WXA3 655 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 EVI5LQ96CN4 794 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 SGSM3Q96HU1 749 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 TRERF1Q96PN7 1200 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 IER2Q9BTL4 223 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 ANKRD2Q9GZV1 360 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 KANSL2Q9H9L4 492 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 IL1RAPL2Q9NP60 686 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 RNF181Q9P0P0 153 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 PPT2Q9UMR5 302 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 FPGT-TNNI3KV9GXZ4 949 aa6.11□□□□□ -1.43
LDLR-209ENST00000558528 THSD7BQ9C0I4 1608 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 COL6A3P12111 3177 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 KAT6BQ8WYB5 2073 aa6.1□□□□□ -1.43
LDLR-209ENST00000558528 PASKQ96RG2 1323 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms